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L1_008_000G1_scaffold_326

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_326_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(116..1612)
DNA (1497bp) protein (499aa)
Beta-xylosidase n=2 Tax=Roseburia intestinalis RepID=D4KUS1_9FIRM
Beta-xylosidase {ECO:0000313|EMBL:CBL11111.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Beta-xylosidase
L1_008_000G1_scaffold_326_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1909..3243)
DNA (1335bp) protein (445aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDW6_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEU99992.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
diguanylate cyclase (GGDEF) domain
L1_008_000G1_scaffold_326_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3464..5044)
DNA (1581bp) protein (527aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDW7_9FIRM
L1_008_000G1_scaffold_326_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5073..5783)
DNA (711bp) protein (237aa)
4Fe-4S binding domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDW8_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEU99994.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
4Fe-4S binding domain.
L1_008_000G1_scaffold_326_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5979..6653
DNA (675bp) protein (225aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDW9_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EEU99995.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
L1_008_000G1_scaffold_326_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6650..7738)
DNA (1089bp) protein (363aa)
HD-GYP domain n=3 Tax=Roseburia RepID=D4KSH2_9FIRM
HD-GYP domain
HD-GYP domain {ECO:0000313|EMBL:CDA53923.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_326_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7747..8781)
DNA (1035bp) protein (345aa)
HD-GYP domain n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYH4_9FIRM
HD-GYP domain {ECO:0000313|EMBL:CDA53924.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
HD-GYP domain
L1_008_000G1_scaffold_326_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8841..9605)
DNA (765bp) protein (255aa)
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSH0_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBL09822.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_326_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9754..10137)
DNA (384bp) protein (128aa)
RNA polymerase sigma factor n=3 Tax=Roseburia RepID=D4KSG9_9FIRM
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_326_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10130..10501)
DNA (372bp) protein (124aa)
RNA polymerase sigma factor n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUR4_9FIRM
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_326_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10503..10952)
DNA (450bp) protein (150aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=4 Tax=Roseburia RepID=D4KUR3_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:CDA53928.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_326_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11137..11448)
DNA (312bp) protein (104aa)
Anti-sigma factor antagonist n=2 Tax=Roseburia intestinalis RepID=D4KSG7_9FIRM
anti-anti-sigma factor
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_326_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11585..12949)
DNA (1365bp) protein (455aa)
Tetratricopeptide repeat n=2 Tax=Roseburia intestinalis RepID=D4KSG6_9FIRM
Tetratricopeptide repeat.
Tetratricopeptide repeat {ECO:0000313|EMBL:CBL11100.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_326_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12998..13141)
DNA (144bp) protein (48aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GDX8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11099.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_326_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13320..14696)
DNA (1377bp) protein (459aa)
Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain n=3 Tax=Roseburia RepID=D4KUQ8_9FIRM
Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain
Predicted polymerase most proteins contain PALM domain HD hydrolase domain and Zn-ribbon domain {ECO:0000313|EMBL:CDA53932.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_326_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15037..17700)
DNA (2664bp) protein (888aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Valine--tRNA ligase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSG2_9FIRM
L1_008_000G1_scaffold_326_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18124..22026)
DNA (3903bp) protein (1301aa)
Putative ATP synthase F0, A subunit n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDY3_9FIRM
Putative ATP synthase F0, A subunit {ECO:0000313|EMBL:EEV00010.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Cation/multidrug efflux pump
L1_008_000G1_scaffold_326_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22263..22478)
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GDY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV00011.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_326_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22635..23504)
DNA (870bp) protein (290aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) n=2 Tax=Roseburia RepID=R6BKU2_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53942.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L1_008_000G1_scaffold_326_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23501..24415)
DNA (915bp) protein (305aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6APG0_9FIRM
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53943.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_008_000G1_scaffold_326_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24615..26051)
DNA (1437bp) protein (479aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUQ3_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL11093.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_326_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26196..27206)
DNA (1011bp) protein (337aa)
Transcriptional regulator, LacI family n=3 Tax=Roseburia RepID=D4KSF7_9FIRM
transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEU99965.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_326_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27644..30088
DNA (2445bp) protein (815aa)
Cellobiose phosphorylase {ECO:0000313|EMBL:CBL09808.1}; EC=2.4.1.20 {ECO:0000313|EMBL:CBL09808.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
cellobiose phosphorylase (EC:2.4.1.20)
Cellobiose phosphorylase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSF6_9FIRM
L1_008_000G1_scaffold_326_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30156..30989)
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=3 Tax=Roseburia RepID=D4KSF5_9FIRM
transcriptional regulator, AraC family
L-rhamnose operon transcriptional activator {ECO:0000313|EMBL:CDA53955.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_326_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31122..32492
DNA (1371bp) protein (457aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSF4_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL09806.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_326_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32559..34337)
DNA (1779bp) protein (593aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL09805.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL09805.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Pyruvate kinase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSF3_9FIRM
L1_008_000G1_scaffold_326_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34408..35340)
DNA (933bp) protein (311aa)
Carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=4 Tax=Roseburia RepID=D4KSF2_9FIRM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723, ECO:0000313|EMBL:CBL11087.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_326_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35499..36098)
DNA (600bp) protein (200aa)
Probable GTP-binding protein EngB n=2 Tax=Roseburia intestinalis RepID=D4KSF1_9FIRM
ribosome biogenesis GTP-binding protein YsxC/EngB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_326_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36092..38422)
DNA (2331bp) protein (777aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Lon protease n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDZ9_9FIRM
ATP-dependent protease La
L1_008_000G1_scaffold_326_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38415..39686)
DNA (1272bp) protein (424aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=4 Tax=Roseburia RepID=D4KSF0_9FIRM
endopeptidase Clp ATP-binding regulatory subunit (clpX)
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 59 in total

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