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L1_008_000G1_scaffold_396

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_396_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(190..381)
DNA (192bp) protein (64aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=U2BZV8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93702.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L1_008_000G1_scaffold_396_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

549..998
DNA (450bp) protein (150aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SS25_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93703.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L1_008_000G1_scaffold_396_3
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1087..2280
DNA (1194bp) protein (398aa)
LysM domain protein n=3 Tax=Clostridium symbiosum RepID=E9SS26_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93704.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
glycoside hydrolase
L1_008_000G1_scaffold_396_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2433..3875)
DNA (1443bp) protein (481aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FCY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05743.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
amidohydrolase
L1_008_000G1_scaffold_396_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3938..4726)
DNA (789bp) protein (263aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter n=3 Tax=Clostridium RepID=E7GNC6_CLOSY
Amino acid ABC transporter {ECO:0000313|EMBL:EGA93706.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L1_008_000G1_scaffold_396_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4716..5381)
DNA (666bp) protein (222aa)
ABC transporter, permease protein n=4 Tax=Clostridium RepID=E9SS29_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93707.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
L1_008_000G1_scaffold_396_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5413..6378)
DNA (966bp) protein (322aa)
ABC transporter, substrate-binding protein, family 3 n=3 Tax=Clostridium RepID=E9SS30_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93708.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
L1_008_000G1_scaffold_396_8
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6895..7677)
DNA (783bp) protein (261aa)
CAAX amino terminal protease family protein n=3 Tax=Clostridium RepID=E9SS31_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05690.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
abortive infection protein
L1_008_000G1_scaffold_396_9
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7809..8867)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=E9SS32_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05691.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_008_000G1_scaffold_396_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8934..9425)
DNA (492bp) protein (164aa)
Transcriptional regulator, MarR family n=4 Tax=Clostridium RepID=E9SS33_CLOSY
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERI75502.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Transcriptional regulators
L1_008_000G1_scaffold_396_11
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9631..10959)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=2 Tax=Clostridium symbiosum RepID=E9SS34_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05693.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_008_000G1_scaffold_396_12
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10988..11344)
DNA (357bp) protein (119aa)
6-O-methylguanine DNA methyltransferase, DNA binding domain protein n=3 Tax=Clostridium RepID=E9SS35_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05694.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
6-O-methylguanine DNA methyltransferase
L1_008_000G1_scaffold_396_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11363..11908)
DNA (546bp) protein (182aa)
Macro domain protein n=2 Tax=Clostridium symbiosum RepID=U2BBI6_CLOSY
Macro domain protein {ECO:0000313|EMBL:ERI75499.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
L1_008_000G1_scaffold_396_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11926..12942)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=3 Tax=Clostridium symbiosum RepID=E9SS37_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93716.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L1_008_000G1_scaffold_396_15
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12975..13160)
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FCZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGA93717.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L1_008_000G1_scaffold_396_16
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13249..13398)
DNA (150bp) protein (50aa)
hypothetical protein n=1 Tax=Desulfitobacterium hafniense RepID=UPI00036A9C55
TIR protein {ECO:0000313|EMBL:EPY09233.1}; TaxID=1117108 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei TS-15.;"
TIR domain-containing protein
L1_008_000G1_scaffold_396_17
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13433..13747)
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=E9SS39_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05698.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L1_008_000G1_scaffold_396_18
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13809..14168)
DNA (360bp) protein (120aa)
ADP-ribose pyrophosphatase (EC:3.6.1.-)
Mutator mutT protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS40_CLOSY
Mutator mutT protein {ECO:0000313|EMBL:ERI75495.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L1_008_000G1_scaffold_396_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14365..15756)
DNA (1392bp) protein (464aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=2 Tax=Clostridium symbiosum RepID=E7GNE0_CLOSY
L1_008_000G1_scaffold_396_20
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15749..17170)
DNA (1422bp) protein (474aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
gnd; 6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating n=3 Tax=Clostridium RepID=E7GNE1_CLOSY
L1_008_000G1_scaffold_396_21
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17190..18386)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=E9SS43_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05703.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
3-carboxymuconate cyclase
L1_008_000G1_scaffold_396_22
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20334..20822)
DNA (489bp) protein (163aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=U2B8X2_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI74594.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
nucleotide pyrophosphohydrolase
L1_008_000G1_scaffold_396_23
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21901..23121)
DNA (1221bp) protein (407aa)
GIY-YIG catalytic domain protein n=4 Tax=Clostridium RepID=E9SS45_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93724.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L1_008_000G1_scaffold_396_24
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23307..23546)
DNA (240bp) protein (80aa)
GIY-YIG catalytic domain protein n=4 Tax=Clostridium RepID=E9SS45_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93724.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L1_008_000G1_scaffold_396_25
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(23994..24197)
DNA (204bp) protein (68aa)
Virulence protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RB42_9FIRM
Virulence protein {ECO:0000313|EMBL:CCZ35989.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Virulence protein
L1_008_000G1_scaffold_396_26
Clostridium sp. CAG:492, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24732..25757)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS47_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:CDA31021.1}; TaxID=1262813 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:492.;"
hypothetical protein
L1_008_000G1_scaffold_396_27
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25807..26076)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS48_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07662.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_008_000G1_scaffold_396_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26271..26819)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS49_CLOSY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA43771.1}; TaxID=498213 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Okra / Type B1).;"
L1_008_000G1_scaffold_396_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26816..27160)
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum RepID=B1IFA3_CLOBK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA43771.1}; TaxID=498213 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Okra / Type B1).;"
L1_008_000G1_scaffold_396_30
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27485..28951)
DNA (1467bp) protein (489aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SS50_CLOSY
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:ERI74911.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Displaying items 1-30 of 55 in total

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