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L1_008_000G1_scaffold_446

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_446_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(373..651)
DNA (279bp) protein (93aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GH89_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55595.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_446_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(710..1036)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KQU3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12116.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_446_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1168..1332
DNA (165bp) protein (55aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GH87_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55592.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_446_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1961..3349
DNA (1389bp) protein (463aa)
Isopropylmalate/homocitrate/citramalate synthases n=2 Tax=Roseburia RepID=D4KQU6_9FIRM
Isopropylmalate/homocitrate/citramalate synthases
Isopropylmalate/homocitrate/citramalate synthases {ECO:0000313|EMBL:CBL09248.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_446_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3360..4019
DNA (660bp) protein (220aa)
Transcriptional regulator, GntR family n=4 Tax=Roseburia RepID=D4KQU7_9FIRM
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CBL12112.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_446_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4034..5245
DNA (1212bp) protein (404aa)
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108, ECO:0000313|EMBL:CBL12111.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Isocitrate dehydrogenase [NADP] n=4 Tax=Roseburia RepID=D4KXM1_9FIRM
L1_008_000G1_scaffold_446_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5242..7185
DNA (1944bp) protein (648aa)
ATPase components of ABC transporters with duplicated ATPase domains n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQU9_9FIRM
ATPase components of ABC transporters with duplicated ATPase domains {ECO:0000313|EMBL:CBL09251.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ATPase components of ABC transporters with duplicated ATPase domains
L1_008_000G1_scaffold_446_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7260..7913
DNA (654bp) protein (218aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BQN5_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
redox-sensing transcriptional repressor Rex
L1_008_000G1_scaffold_446_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8053..9585
DNA (1533bp) protein (511aa)
YjeF C-terminal region hydroxyethylthiazole kinase-related/yjeF N-terminal region n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AX69_9FIRM
YjeF C-terminal region hydroxyethylthiazole kinase-related/yjeF N-terminal region {ECO:0000313|EMBL:CDA55580.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
L1_008_000G1_scaffold_446_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9653..10822
DNA (1170bp) protein (390aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=2 Tax=Roseburia RepID=C7GH76_9FIRM
L1_008_000G1_scaffold_446_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10895..11242
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
mRNA interferase n=4 Tax=Roseburia RepID=D4KXL7_9FIRM
Growth inhibitor
L1_008_000G1_scaffold_446_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11326..12054
DNA (729bp) protein (243aa)
Probable transcriptional regulatory protein BN501_00771 n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNV9_9FIRM
conserved hypothetical protein TIGR01033
Probable transcriptional regulatory protein BN484_02247 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_446_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12244..13695
DNA (1452bp) protein (484aa)
glycogen/starch synthases, ADP-glucose type (EC:2.4.1.21)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484, ECO:0000313|EMBL:CBL09256.1};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Glycogen synthase n=3 Tax=Roseburia RepID=D4KXL4_9FIRM
L1_008_000G1_scaffold_446_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13936..14589
DNA (654bp) protein (218aa)
Protease subunit of ATP-dependent Clp proteases n=4 Tax=Roseburia RepID=D4KXL3_9FIRM
Protease subunit of ATP-dependent Clp proteases
Protease subunit of ATP-dependent Clp proteases {ECO:0000313|EMBL:CBL12103.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_446_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14693..15571
DNA (879bp) protein (293aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GH69_9FIRM
L1_008_000G1_scaffold_446_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15623..18358
DNA (2736bp) protein (912aa)
FtsK/SpoIIIE family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B9B5_9FIRM
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:CDA55571.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DNA translocase FtsK
L1_008_000G1_scaffold_446_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18377..20047
DNA (1671bp) protein (557aa)
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Formate--tetrahydrofolate ligase n=4 Tax=Roseburia RepID=D4KQV7_9FIRM
L1_008_000G1_scaffold_446_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20071..21198
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXL0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12100.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_446_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21292..21873)
DNA (582bp) protein (194aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AUL7_9FIRM
L1_008_000G1_scaffold_446_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21939..22463)
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQV9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09261.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_446_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22626..23117
DNA (492bp) protein (164aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK9_9FIRM
conserved hypothetical protein TIGR00246
L1_008_000G1_scaffold_446_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23187..24713
DNA (1527bp) protein (509aa)
Beta-xylosidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK8_9FIRM
Beta-xylosidase
Beta-xylosidase {ECO:0000313|EMBL:CBL12098.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_446_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24831..26357)
DNA (1527bp) protein (509aa)
SSS sodium solute transporter superfamily n=2 Tax=Roseburia intestinalis RepID=D4KXK7_9FIRM
SSS sodium solute transporter superfamily
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:CBL12097.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_446_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26674..27879
DNA (1206bp) protein (402aa)
Chloride transporter, ClC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE71_9FIRM
Chloride transporter, ClC family {ECO:0000313|EMBL:EEU99860.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Chloride channel protein EriC
L1_008_000G1_scaffold_446_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28060..28698
DNA (639bp) protein (213aa)
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Endonuclease III n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQW3_9FIRM
L1_008_000G1_scaffold_446_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28846..29634
DNA (789bp) protein (263aa)
Uncharacterized protein with SCP/PR1 domains n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK5_9FIRM
Uncharacterized protein with SCP/PR1 domains
Uncharacterized protein with SCP/PR1 domains {ECO:0000313|EMBL:CBL12095.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_446_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29846..30664
DNA (819bp) protein (273aa)
FAD binding domain in molybdopterin dehydrogenase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE76_9FIRM
FAD binding domain in molybdopterin dehydrogenase {ECO:0000313|EMBL:EEU99865.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
L1_008_000G1_scaffold_446_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30745..31209
DNA (465bp) protein (155aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs (EC:1.2.99.2)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs {ECO:0000313|EMBL:CBL09268.1}; EC=1.2.99.2 {ECO:0000313|EMBL:CBL09268.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs n=2 Tax=Roseburia RepID=D4KQW6_9FIRM
L1_008_000G1_scaffold_446_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31206..33509
DNA (2304bp) protein (768aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:CBL12091.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CBL12091.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXK1_9FIRM
L1_008_000G1_scaffold_446_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33601..34140
DNA (540bp) protein (180aa)
Molybdenum hydroxylase accessory protein YgfJ family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BQL4_9FIRM
Molybdenum hydroxylase accessory protein YgfJ family {ECO:0000313|EMBL:CDA55552.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
molybdopterin-guanine dinucleotide biosynthesis protein A
Displaying items 1-30 of 43 in total

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