ggKbase home page

L1_008_000G1_scaffold_456

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_456_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(209..334)
DNA (126bp) protein (42aa)
Helix-turn-helix domain protein n=2 Tax=Clostridium RepID=R6PD04_9CLOT
Helix-turn-helix domain protein {ECO:0000313|EMBL:CDC22183.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative Xre family DNA-binding protein
L1_008_000G1_scaffold_456_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(466..1290)
DNA (825bp) protein (275aa)
Multidrug-efflux transporter 2 regulator n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRI8_9CLOT
Multidrug-efflux transporter 2 regulator {ECO:0000313|EMBL:EEA81275.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
MerR family transcriptional regulator
L1_008_000G1_scaffold_456_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1374..2012
DNA (639bp) protein (213aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRI7_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEA81274.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_008_000G1_scaffold_456_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2069..3742)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF35_9CLOT">RepID=R6PF35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22180.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
beta-N-acetylhexosaminidase
L1_008_000G1_scaffold_456_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3931..5310
DNA (1380bp) protein (460aa)
NAD-dependent aldehyde dehydrogenases (EC:1.2.1.3)
Aldehyde dehydrogenase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMV3_9CLOT
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_456_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5381..6499)
DNA (1119bp) protein (373aa)
Sporulation integral membrane protein YtvI n=2 Tax=Clostridium RepID=B6FRI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22178.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sporulation integral membrane protein YtvI
L1_008_000G1_scaffold_456_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6500..7102)
DNA (603bp) protein (201aa)
Probable GTP-binding protein EngB n=2 Tax=Clostridium RepID=B6FRI2_9CLOT
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L1_008_000G1_scaffold_456_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7092..9428)
DNA (2337bp) protein (779aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRI1_9CLOT
L1_008_000G1_scaffold_456_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9487..10740)
DNA (1254bp) protein (418aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Clostridium RepID=B6FRI0_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L1_008_000G1_scaffold_456_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10816..11397)
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Clostridium RepID=B6FRH9_9CLOT
L1_008_000G1_scaffold_456_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11427..12713)
DNA (1287bp) protein (429aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Trigger factor n=1 Tax=Clostridium nexile CAG:348 RepID=R6PCZ3_9CLOT
trigger factor
L1_008_000G1_scaffold_456_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12804..13481)
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRH7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22172.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_456_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13490..14047)
DNA (558bp) protein (186aa)
DJ-1 family protein n=2 Tax=Clostridium RepID=B6FRH6_9CLOT
DJ-1 family protein {ECO:0000313|EMBL:EEA81263.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DJ-1 family protein
L1_008_000G1_scaffold_456_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14164..14613
DNA (450bp) protein (150aa)
Adenylate cyclase n=2 Tax=Clostridium RepID=B6FRH5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22170.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
adenylate cyclase
L1_008_000G1_scaffold_456_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14650..15858)
DNA (1209bp) protein (403aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Aspartokinase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMU3_9CLOT
aspartate kinase
L1_008_000G1_scaffold_456_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15868..17070)
DNA (1203bp) protein (401aa)
phosphoglycerate mutase (EC:5.4.2.1)
Proposed homoserine kinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRH3_9CLOT
Proposed homoserine kinase {ECO:0000313|EMBL:EEA81260.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_000G1_scaffold_456_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17099..18313)
DNA (1215bp) protein (405aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=2 Tax=Clostridium RepID=B6FRH2_9CLOT
L1_008_000G1_scaffold_456_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18321..18761)
DNA (441bp) protein (147aa)
UPF0735 ACT domain-containing protein CLONEX_02743 n=2 Tax=Clostridium RepID=B6FRH1_9CLOT
UPF0735 ACT domain-containing protein CLONEX_02743 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
amino acid-binding ACT protein
L1_008_000G1_scaffold_456_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18764..19705)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF23_9CLOT">RepID=R6PF23_9CLOT
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
peptide chain release factor 2
L1_008_000G1_scaffold_456_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19893..22457)
DNA (2565bp) protein (855aa)
Protein translocase subunit SecA n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRG9_9CLOT
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
protein translocase subunit secA
L1_008_000G1_scaffold_456_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22539..23327)
DNA (789bp) protein (263aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PCY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22163.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_456_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23417..23734)
DNA (318bp) protein (106aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22162.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_456_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23858..24616)
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUI4_9CLOT
L1_008_000G1_scaffold_456_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24737..25621)
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium nexile CAG:348 PF20_9CLOT">RepID=R6PF20_9CLOT
L1_008_000G1_scaffold_456_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25706..26335)
DNA (630bp) protein (210aa)
Single-strand binding family protein n=2 Tax=Clostridium RepID=B6FRG3_9CLOT
Single-strand binding family protein {ECO:0000313|EMBL:EEA81391.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Single-stranded DNA-binding protein
L1_008_000G1_scaffold_456_26
unknown

Not on your lists

comp(26325..26462)
DNA (138bp) protein (46aa)

This feature has no annotations

L1_008_000G1_scaffold_456_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26590..28413
DNA (1824bp) protein (608aa)
GTP-binding protein TypA n=2 Tax=Clostridium RepID=B6FRG2_9CLOT
GTP-binding protein TypA {ECO:0000313|EMBL:EEA81390.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
GTP-binding protein TypA/BipA
L1_008_000G1_scaffold_456_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28554..29090
DNA (537bp) protein (179aa)
Ribosomal subunit interface protein n=2 Tax=Clostridium RepID=B6FRG1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22157.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ribosomal subunit interface protein
L1_008_000G1_scaffold_456_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29124..29780)
DNA (657bp) protein (219aa)
YigZ family protein n=2 Tax=Clostridium RepID=B6FRG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22156.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00257
L1_008_000G1_scaffold_456_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29948..32473
DNA (2526bp) protein (842aa)
Transglycosylase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRF9_9CLOT
Transglycosylase {ECO:0000313|EMBL:EEA81387.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycosyltransferase family b-glycosyltransferase/PBP transpeptidase
Displaying items 1-30 of 43 in total

View Taxonomy