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L1_008_000G1_scaffold_466

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_466_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..169
-----------------
DNA (168bp)
protein (56aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AWP6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA55440.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_466_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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270..2069
-----------------
DNA (1800bp)
protein (600aa)
Oligoendopeptidase F {ECO:0000313|EMBL:EEV02189.1}; EC=3.4.24.- {ECO:0000313|EMBL:EEV02189.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
oligopeptidase F. Metallo peptidase. MEROPS family M03B (EC:3.4.24.-)
Oligoendopeptidase F n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7P1_9FIRM
L1_008_000G1_scaffold_466_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2093..2371
-----------------
DNA (279bp)
protein (93aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02190.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_466_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2481..2915)
-----------------
DNA (435bp)
protein (145aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR44_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09346.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_466_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3183..4091
-----------------
DNA (909bp)
protein (303aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Quinolinate synthetase A n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR43_9FIRM
quinolinate synthetase A
L1_008_000G1_scaffold_466_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4156..5376
-----------------
DNA (1221bp)
protein (407aa)
Aspartate oxidase (EC:1.4.3.16)
Aspartate oxidase {ECO:0000313|EMBL:CBL09344.1}; EC=1.4.3.16 {ECO:0000313|EMBL:CBL09344.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Aspartate oxidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR42_9FIRM
L1_008_000G1_scaffold_466_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5339..6229
-----------------
DNA (891bp)
protein (297aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR41_9FIRM
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:CDA55447.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_466_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6293..6829
-----------------
DNA (537bp)
protein (179aa)
Predicted small molecule binding protein (Contains 3H domain) n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR40_9FIRM
Predicted small molecule binding protein (contains 3H domain)
Predicted small molecule binding protein (Contains 3H domain) {ECO:0000313|EMBL:CBL09342.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_466_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6861..7157)
-----------------
DNA (297bp)
protein (99aa)
Predicted transcriptional regulators n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR39_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL09341.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_466_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7293..8852
-----------------
DNA (1560bp)
protein (520aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBL09340.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
hypothetical protein
L1_008_000G1_scaffold_466_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9083..9961
-----------------
DNA (879bp)
protein (293aa)
TIGR00255 family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7P8_9FIRM
TIGR00255 family protein {ECO:0000313|EMBL:EEV02196.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_466_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9975..10244
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein conserved in bacteria n=3 Tax=Roseburia intestinalis RepID=D4KR37_9FIRM
UPF0296 protein ROSINTL182_05923 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_466_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10258..10863
-----------------
DNA (606bp)
protein (202aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Guanylate kinase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXC6_9FIRM
L1_008_000G1_scaffold_466_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10937..11206
-----------------
DNA (270bp)
protein (90aa)
DNA-directed RNA polymerase, omega subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
DNA-directed RNA polymerase subunit omega n=3 Tax=Roseburia RepID=D4KR36_9FIRM
L1_008_000G1_scaffold_466_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11196..12530
-----------------
DNA (1335bp)
protein (445aa)
SSU ribosomal protein S12P methylthiotransferase (EC:1.3.1.74 2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXC8_9FIRM
L1_008_000G1_scaffold_466_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12573..13115
-----------------
DNA (543bp)
protein (181aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CBL12019.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CBL12019.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Roseburia intestinalis RepID=D4KXC9_9FIRM
L1_008_000G1_scaffold_466_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13127..13666
-----------------
DNA (540bp)
protein (180aa)
Competence/damage-inducible protein CinA n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B8T3_9FIRM
Competence/damage-inducible protein CinA {ECO:0000313|EMBL:CDA55456.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
competence damage-inducible protein A
L1_008_000G1_scaffold_466_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13717..14271
-----------------
DNA (555bp)
protein (185aa)
RNA methyltransferase, RsmD family {ECO:0000313|EMBL:EEV02203.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEV02203.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
RNA methyltransferase, RsmD family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7Q5_9FIRM
RNA methyltransferase, RsmD family
L1_008_000G1_scaffold_466_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14307..14792
-----------------
DNA (486bp)
protein (162aa)
pantetheine-phosphate adenylyltransferase, bacterial (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Phosphopantetheine adenylyltransferase n=4 Tax=Roseburia RepID=D4KR32_9FIRM
L1_008_000G1_scaffold_466_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14805..15410
-----------------
DNA (606bp)
protein (202aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G7Q7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55459.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_466_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15337..16305)
-----------------
DNA (969bp)
protein (323aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXD3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12023.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_466_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16336..17793
-----------------
DNA (1458bp)
protein (486aa)
aminoacyl-histidine dipeptidase (EC:3.4.13.3)
Aminoacyl-histidine dipeptidase {ECO:0000313|EMBL:CBL09332.1}; EC=3.4.13.3 {ECO:0000313|EMBL:CBL09332.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Aminoacyl-histidine dipeptidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR30_9FIRM
L1_008_000G1_scaffold_466_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17848..18690
-----------------
DNA (843bp)
protein (281aa)
Peptidase, M23 family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7R1_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EEV02118.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Membrane proteins related to metalloendopeptidases
L1_008_000G1_scaffold_466_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18795..19502
-----------------
DNA (708bp)
protein (236aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=2 Tax=Roseburia RepID=C7G7R2_9FIRM
L1_008_000G1_scaffold_466_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19587..21611
-----------------
DNA (2025bp)
protein (675aa)
UPF0313 protein BN484_02159 n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B359_9FIRM
UPF0313 protein BN484_02159 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Fe-S oxidoreductase
L1_008_000G1_scaffold_466_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21624..22613
-----------------
DNA (990bp)
protein (330aa)
Pseudouridylate synthases, 23S RNA-specific (EC:5.4.99.12)
Pseudouridylate synthases 23S RNA-specific n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AWS6_9FIRM
Pseudouridylate synthases 23S RNA-specific {ECO:0000313|EMBL:CDA55465.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_466_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22706..23239
-----------------
DNA (534bp)
protein (178aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Holliday junction resolvase RecU n=4 Tax=Roseburia RepID=D4KR26_9FIRM
Penicillin-binding protein-related factor A, putative recombinase
L1_008_000G1_scaffold_466_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23376..24560
-----------------
DNA (1185bp)
protein (395aa)
ATP phosphoribosyltransferase regulatory subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase regulatory subunit n=4 Tax=Roseburia RepID=D4KR25_9FIRM
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_466_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24574..25218
-----------------
DNA (645bp)
protein (215aa)
ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ATP phosphoribosyltransferase n=2 Tax=Roseburia RepID=D4KXE1_9FIRM
L1_008_000G1_scaffold_466_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25292..26584
-----------------
DNA (1293bp)
protein (431aa)
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Histidinol dehydrogenase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXE2_9FIRM
Displaying items 1-30 of 58 in total

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