ggKbase home page

L1_008_000G1_scaffold_512

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_512_1
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1569)
DNA (1569bp) protein (523aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29981.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L1_008_000G1_scaffold_512_2
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1685..1996)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YXA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26206.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_512_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2096..4393)
DNA (2298bp) protein (766aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ATP-dependent DNA helicase PcrA n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH16_9FIRM
ATP-dependent DNA helicase PcrA
L1_008_000G1_scaffold_512_4
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4564..5211
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YNG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26204.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Domain of unknown function (DUF1836).
L1_008_000G1_scaffold_512_5
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5265..5567)
DNA (303bp) protein (101aa)
TrpR-related protein YerC/YecD n=1 Tax=Roseburia sp. CAG:197 RepID=R5YFB7_9FIRM
TrpR-related protein YerC/YecD {ECO:0000313|EMBL:CDA26203.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
TrpR-related protein YerC/YecD
L1_008_000G1_scaffold_512_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5766..6638
DNA (873bp) protein (291aa)
CAAX amino terminal protease family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAD6_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:CCZ77662.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
CAAX amino terminal protease family.
L1_008_000G1_scaffold_512_7
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6650..7087)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZBK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26202.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_512_8
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7292..8302
DNA (1011bp) protein (337aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Aspartate--ammonia ligase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YXA3_9FIRM
asparagine synthetase AsnA
L1_008_000G1_scaffold_512_9
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8366..10273)
DNA (1908bp) protein (636aa)
NAD synthetase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH12_9FIRM
NAD synthetase {ECO:0000313|EMBL:CDA26200.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
NAD synthetase
L1_008_000G1_scaffold_512_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10270..11139)
DNA (870bp) protein (290aa)
33 kDa chaperonin n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2N2_9FIRM
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Disulfide bond chaperones of the HSP33 family
L1_008_000G1_scaffold_512_11
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11162..11902)
DNA (741bp) protein (247aa)
Methyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YNG2_9FIRM
Methyltransferase {ECO:0000313|EMBL:CDA26199.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Methyltransferase domain.
L1_008_000G1_scaffold_512_12
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12032..13075
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YFB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26198.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_512_13
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13079..14041)
DNA (963bp) protein (321aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZBK2_9FIRM
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000313|EMBL:CDA26197.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_000G1_scaffold_512_14
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14237..15208
DNA (972bp) protein (324aa)
HMGL family protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YX97_9FIRM
HMGL family protein {ECO:0000313|EMBL:CDA26196.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
HMGL family protein
L1_008_000G1_scaffold_512_15
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15268..16434)
DNA (1167bp) protein (389aa)
Flagellin lysine-N-methylase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH08_9FIRM
Flagellin lysine-N-methylase {ECO:0000313|EMBL:CDA26195.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
flagellin lysine-N-methylase
L1_008_000G1_scaffold_512_16
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16431..16757)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YNF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26194.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_512_17
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16786..17304)
DNA (519bp) protein (173aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.17.4.2 1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YFA9_9FIRM
L1_008_000G1_scaffold_512_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17339..19525)
DNA (2187bp) protein (729aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZBJ9_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDA26192.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_000G1_scaffold_512_19
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19497..19637)
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YX92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26191.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_000G1_scaffold_512_20
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19726..20193)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26190.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
MarR family transcriptional regulator
L1_008_000G1_scaffold_512_21
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20332..22080
DNA (1749bp) protein (583aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Roseburia sp. CAG:197 RepID=R5YNF3_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CDA26189.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000G1_scaffold_512_22
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22080..23975
DNA (1896bp) protein (632aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TLJ1_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CDC74293.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000G1_scaffold_512_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24089..25201)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78081.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_008_000G1_scaffold_512_24
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25230..26345)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5DIB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75681.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
hypothetical protein
L1_008_000G1_scaffold_512_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26342..27205)
DNA (864bp) protein (288aa)
ABC transporter ATP-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V459_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ78231.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type multidrug transport system, ATPase component
L1_008_000G1_scaffold_512_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27183..27956)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78230.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_008_000G1_scaffold_512_27
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27953..28501)
DNA (549bp) protein (183aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Dorea sp. CAG:105 RepID=R5D694_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:CCX75678.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000G1_scaffold_512_28
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28633..29565)
DNA (933bp) protein (311aa)
Esterase/lipase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YS89_9FIRM
Esterase/lipase {ECO:0000313|EMBL:CDA24351.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Esterase/lipase
L1_008_000G1_scaffold_512_29
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29562..30227)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z694_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24352.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_512_30
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30220..31515)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YA41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24353.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
Displaying items 1-30 of 41 in total

View Taxonomy