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L1_008_000G1_scaffold_536

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_536_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(105..1049)
DNA (945bp) protein (315aa)
HD domain protein n=2 Tax=Clostridium RepID=B6FP32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22908.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
uncharacterized domain HDIG
L1_008_000G1_scaffold_536_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1063..2316)
DNA (1254bp) protein (418aa)
Periplasmic serine protease, DO/DeqQ family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP33_9CLOT
Periplasmic serine protease, DO/DeqQ family {ECO:0000313|EMBL:EEA82219.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_008_000G1_scaffold_536_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2405..4789
DNA (2385bp) protein (795aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Endonuclease MutS2 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP34_9CLOT
MutS2 family protein
L1_008_000G1_scaffold_536_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4822..5523
DNA (702bp) protein (234aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82221.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000G1_scaffold_536_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5525..6937
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP36_9CLOT
Signal transduction histidine kinase
L1_008_000G1_scaffold_536_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6934..8106)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22913.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_008_000G1_scaffold_536_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8368..10479
DNA (2112bp) protein (704aa)
pflB; Pyruvate formate lyase (EC:2.3.1.54)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQ45_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22914.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_536_8
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10422..10742
DNA (321bp) protein (107aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=E9RXS8_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:EPD61993.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
formate C-acetyltransferase glycine radical
L1_008_000G1_scaffold_536_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10869..11621
DNA (753bp) protein (251aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP40_9CLOT
L1_008_000G1_scaffold_536_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11716..11886
DNA (171bp) protein (57aa)
Ferredoxin n=2 Tax=Clostridium RepID=B6FP41_9CLOT
Ferredoxin {ECO:0000313|EMBL:EEA82227.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L1_008_000G1_scaffold_536_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12105..12848)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP42_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82228.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein (putative transposase or invertase)
L1_008_000G1_scaffold_536_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12977..13564
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22919.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulators
L1_008_000G1_scaffold_536_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13602..17774)
DNA (4173bp) protein (1391aa)
1,2-A-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82230.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_000G1_scaffold_536_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18014..22663)
DNA (4650bp) protein (1550aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP45_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82231.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
alpha-L-fucosidase
L1_008_000G1_scaffold_536_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22858..29139)
DNA (6282bp) protein (2094aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QLS7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22922.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_536_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29408..30748)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82234.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
replicative DNA helicase
L1_008_000G1_scaffold_536_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30759..31205)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQ57_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L9P
L1_008_000G1_scaffold_536_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31208..33256)
DNA (2049bp) protein (683aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP50_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82236.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_008_000G1_scaffold_536_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33380..39163)
DNA (5784bp) protein (1928aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF18_9CLOT">RepID=R6PF18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22928.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
endo-alpha-N-acetylgalactosaminidase
L1_008_000G1_scaffold_536_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(39425..39817)
DNA (393bp) protein (131aa)
50S ribosomal protein L7/L12 n=2 Tax=Clostridium RepID=B6FP53_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L12P
L1_008_000G1_scaffold_536_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(39889..40422)
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FP54_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_008_000G1_scaffold_536_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40878..41915)
DNA (1038bp) protein (346aa)
Transposase and inactivated derivatives, IS30 family n=2 Tax=Clostridiales RepID=D4M150_9FIRM
Transposase and inactivated derivatives, IS30 family
Integrase core domain protein {ECO:0000313|EMBL:EEA83866.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_000G1_scaffold_536_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41944..42294)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B6FJD3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL24963.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000G1_scaffold_536_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42447..43430)
DNA (984bp) protein (328aa)
ParB-like nuclease domain n=3 Tax=Clostridiales RepID=D4M152_9FIRM
ParB-like nuclease domain.
ParB-like nuclease domain {ECO:0000313|EMBL:CBL24964.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Displaying 24 items

View Taxonomy