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L1_008_000G1_scaffold_539

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_539_1
unknown

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2..94
-----------------
DNA (93bp)
protein (31aa)

This feature has no annotations

L1_008_000G1_scaffold_539_2
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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534..1046
-----------------
DNA (513bp)
protein (171aa)
Sigma-24 ECF subfamily n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZAG0_9FIRM
Sigma-24 ECF subfamily {ECO:0000313|EMBL:CDA25787.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000G1_scaffold_539_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1039..3093
-----------------
DNA (2055bp)
protein (685aa)
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats n=1 Tax=Roseburia sp. CAG:197 RepID=R5YE59_9FIRM
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats {ECO:0000313|EMBL:CDA25788.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats
L1_008_000G1_scaffold_539_4
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3452..4198
-----------------
DNA (747bp)
protein (249aa)
Transcriptional regulators of sugar metabolism n=1 Tax=Roseburia sp. CAG:197 RepID=R5YM95_9FIRM
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CDA25789.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Transcriptional regulators of sugar metabolism
L1_008_000G1_scaffold_539_5
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4199..5113
-----------------
DNA (915bp)
protein (305aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YFX5_9FIRM
L1_008_000G1_scaffold_539_6
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5126..7168
-----------------
DNA (2043bp)
protein (681aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YWA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25791.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L1_008_000G1_scaffold_539_7
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7206..7463
-----------------
DNA (258bp)
protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZAG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25792.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Phosphotransferase System HPr (HPr) Family
L1_008_000G1_scaffold_539_8
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7485..9101
-----------------
DNA (1617bp)
protein (539aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YE65_9FIRM
L1_008_000G1_scaffold_539_9
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9306..10157
-----------------
DNA (852bp)
protein (284aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Roseburia sp. CAG:197 RepID=R5YMA1_9FIRM
conserved hypothetical protein TIGR00096
L1_008_000G1_scaffold_539_10
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10188..11939)
-----------------
DNA (1752bp)
protein (584aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YFY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25795.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_539_11
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12034..12648
-----------------
DNA (615bp)
protein (205aa)
Spore maturation protein A n=1 Tax=Roseburia sp. CAG:197 RepID=R5YWB2_9FIRM
Spore maturation protein A {ECO:0000313|EMBL:CDA25796.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
nucleoside recognition domain containing protein
L1_008_000G1_scaffold_539_12
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12670..13194
-----------------
DNA (525bp)
protein (175aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZAH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25797.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
spore maturation protein B
L1_008_000G1_scaffold_539_13
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13365..14795
-----------------
DNA (1431bp)
protein (477aa)
Putative methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YE76_9FIRM
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDA25798.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
putative methyl-accepting chemotaxis protein
L1_008_000G1_scaffold_539_14
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15075..15329
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YMA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25799.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_000G1_scaffold_539_15
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15659..16381
-----------------
DNA (723bp)
protein (241aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YFY4_9FIRM
L1_008_000G1_scaffold_539_16
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16390..16593
-----------------
DNA (204bp)
protein (68aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YWB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25801.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_539_17
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16737..17027
-----------------
DNA (291bp)
protein (97aa)
30S ribosomal protein S6 n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZAH9_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
30S ribosomal protein S6
L1_008_000G1_scaffold_539_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17049..17489
-----------------
DNA (441bp)
protein (147aa)
Single-stranded DNA-binding protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YE83_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
single-strand binding protein
L1_008_000G1_scaffold_539_19
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17508..17765
-----------------
DNA (258bp)
protein (86aa)
30S ribosomal protein S18 n=1 Tax=Roseburia sp. CAG:197 RepID=R5YMB2_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
rpsR; 30S ribosomal protein S18
L1_008_000G1_scaffold_539_20
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17848..18393
-----------------
DNA (546bp)
protein (182aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Phosphoglycerate mutase family protein n=1 Tax=Coprococcus comes CAG:19 RepID=R6LUC2_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:CDB85746.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
L1_008_000G1_scaffold_539_21
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18586..19920
-----------------
DNA (1335bp)
protein (445aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YWC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25806.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
putative ATP/GTP-binding protein
L1_008_000G1_scaffold_539_22
unknown

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20070..20177
-----------------
DNA (108bp)
protein (36aa)

This feature has no annotations

L1_008_000G1_scaffold_539_23
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20228..21400
-----------------
DNA (1173bp)
protein (391aa)
Transcriptional regulator CdaR n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZAI6_9FIRM
Transcriptional regulator CdaR {ECO:0000313|EMBL:CDA25807.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
transcriptional regulator CdaR
L1_008_000G1_scaffold_539_24
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21485..22567)
-----------------
DNA (1083bp)
protein (361aa)
Histidinol-phosphate aminotransferase 1 n=1 Tax=Roseburia sp. CAG:197 RepID=R5YE90_9FIRM
Histidinol-phosphate aminotransferase 1 {ECO:0000313|EMBL:CDA25808.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hisC; histidinol-phosphate aminotransferase
L1_008_000G1_scaffold_539_25
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22835..24187
-----------------
DNA (1353bp)
protein (451aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YMB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25809.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
MATE efflux family protein
L1_008_000G1_scaffold_539_26
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24293..25306)
-----------------
DNA (1014bp)
protein (338aa)
lactate dehydrogenase (EC:1.1.1.29)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5STC0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ54024.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
L1_008_000G1_scaffold_539_27
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25617..26534
-----------------
DNA (918bp)
protein (306aa)
Oligopeptide ABC transporter permease protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YWC5_9FIRM
Oligopeptide ABC transporter permease protein {ECO:0000313|EMBL:CDA25811.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
peptide ABC transporter permease
L1_008_000G1_scaffold_539_28
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26550..27467
-----------------
DNA (918bp)
protein (306aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZAJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25812.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
L1_008_000G1_scaffold_539_29
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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27480..28517
-----------------
DNA (1038bp)
protein (346aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YE95_9FIRM
Oligopeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA25813.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
oligopeptide transport ATP-binding protein OppD
L1_008_000G1_scaffold_539_30
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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28510..29529
-----------------
DNA (1020bp)
protein (340aa)
Oligopeptide/dipeptide ABC transporter ATP-binding protein domain n=1 Tax=Roseburia sp. CAG:197 RepID=R5YMC3_9FIRM
Oligopeptide/dipeptide ABC transporter ATP-binding protein domain {ECO:0000313|EMBL:CDA25814.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
appF; oligopeptide ABC transporter ATPase
Displaying items 1-30 of 47 in total

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