ggKbase home page

L1_008_000G1_scaffold_586

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_586_1
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..715
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y8N3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA23818.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_586_2
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(944..2719)
DNA (1776bp) protein (592aa)
ABC transporter n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGE7_9FIRM
ABC transporter {ECO:0000313|EMBL:CDA23819.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
L1_008_000G1_scaffold_586_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2713..3882)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YA78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA23820.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_586_4
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4018..4470
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA23821.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_586_5
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4612..5949
DNA (1338bp) protein (446aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Trigger factor n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z4S3_9FIRM
trigger factor
L1_008_000G1_scaffold_586_6
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6035..6616
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y8N9_9FIRM
ATP-dependent Clp protease, proteolytic subunit ClpP
L1_008_000G1_scaffold_586_7
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6726..8009
DNA (1284bp) protein (428aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGF0_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ATP-dependent protease ATP-binding subunit
L1_008_000G1_scaffold_586_8
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8026..10341
DNA (2316bp) protein (772aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Lon protease n=1 Tax=Roseburia sp. CAG:197 RepID=R5YA84_9FIRM
ATP-dependent protease La
L1_008_000G1_scaffold_586_9
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10408..11169
DNA (762bp) protein (254aa)
Probable GTP-binding protein EngB n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQV9_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L1_008_000G1_scaffold_586_10
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11183..12088
DNA (906bp) protein (302aa)
Adhesion lipoprotein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z4S8_9FIRM
Adhesion lipoprotein {ECO:0000313|EMBL:CDA23827.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L1_008_000G1_scaffold_586_11
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12103..12876
DNA (774bp) protein (258aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC-type Mn/Zn transport systems ATPase component n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y8P5_9FIRM
ABC-type Mn/Zn transport systems ATPase component {ECO:0000313|EMBL:CDA23828.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_000G1_scaffold_586_12
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12869..13681
DNA (813bp) protein (271aa)
ABC-3 protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGF4_9FIRM
ABC-3 protein {ECO:0000313|EMBL:CDA23829.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
ABC-type Mn2+/Zn2+ transport systems, permease components
L1_008_000G1_scaffold_586_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13780..14652
DNA (873bp) protein (291aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIP2_9FIRM
L1_008_000G1_scaffold_586_14
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14689..15363
DNA (675bp) protein (225aa)
GntR domain protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQW4_9FIRM
GntR domain protein {ECO:0000313|EMBL:CDA23831.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
transcriptional regulator, GntR family
L1_008_000G1_scaffold_586_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15368..16981
DNA (1614bp) protein (538aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VB19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77912.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Bacillus/Clostridium GerA spore germination protein.
L1_008_000G1_scaffold_586_16
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16985..18775
DNA (1791bp) protein (597aa)
Spore germination protein-like protein YndE n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9A5_9FIRM
Spore germination protein-like protein YndE {ECO:0000313|EMBL:CDA24013.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Spore germination protein.
L1_008_000G1_scaffold_586_17
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18772..19467
DNA (696bp) protein (232aa)
Stage II sporulation protein R n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH31_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:CDA24014.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
stage II sporulation protein R
L1_008_000G1_scaffold_586_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19508..19954
DNA (447bp) protein (149aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB09_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA24015.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_586_19
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19999..20484)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24016.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_586_20
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20640..21839
DNA (1200bp) protein (400aa)
FKBP-type peptidyl-prolyl cis-trans isomerase (Trigger factor) n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z5H3_9FIRM
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
L1_008_000G1_scaffold_586_21
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21885..23276
DNA (1392bp) protein (464aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9A9_9FIRM
L1_008_000G1_scaffold_586_22
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23327..23764
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24019.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_000G1_scaffold_586_23
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23874..24017
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24020.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_586_24
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24247..25602
DNA (1356bp) protein (452aa)
Arylsulfatase regulator (Fe-S oxidoreductase) n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRG9_9FIRM
Arylsulfatase regulator (Fe-S oxidoreductase) {ECO:0000313|EMBL:CDA24021.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
arylsulfatase regulator (Fe-S oxidoreductase)
L1_008_000G1_scaffold_586_25
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25624..27930
DNA (2307bp) protein (769aa)
Bifunctional preprotein translocase subunit SecD/SecF n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z5I0_9FIRM
Bifunctional preprotein translocase subunit SecD/SecF {ECO:0000313|EMBL:CDA24022.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
bifunctional preprotein translocase subunit SecD/SecF
L1_008_000G1_scaffold_586_26
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28019..28303
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9B4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24023.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Predicted membrane protein
L1_008_000G1_scaffold_586_27
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28414..29661
DNA (1248bp) protein (416aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Serine hydroxymethyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YH39_9FIRM
glyA; serine hydroxymethyltransferase
L1_008_000G1_scaffold_586_28
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29776..31065
DNA (1290bp) protein (430aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YB17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24025.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_000G1_scaffold_586_29
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31205..33286
DNA (2082bp) protein (694aa)
PTS system lactose/cellobiose family IIC component n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRH6_9FIRM
PTS system lactose/cellobiose family IIC component {ECO:0000313|EMBL:CDA24026.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000G1_scaffold_586_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33473..34060
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77930.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
Displaying items 1-30 of 38 in total

View Taxonomy