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L1_008_000G1_scaffold_593

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_593_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..505)
DNA (504bp) protein (168aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Release factor glutamine methyltransferase n=2 Tax=Bifidobacterium longum RepID=C5EBI9_BIFLI
hemK; hemk
L1_008_000G1_scaffold_593_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(568..1656)
DNA (1089bp) protein (363aa)
Peptide chain release factor 1 n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=RF1_BIFLD
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_000G1_scaffold_593_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(1810..2022)
DNA (213bp) protein (71aa)
50S ribosomal protein L31 n=26 Tax=Bifidobacterium RepID=RL31_BIFLD
rpmE2; LSU ribosomal protein L31P
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_000G1_scaffold_593_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2351..3580)
DNA (1230bp) protein (410aa)
NagC-type Transcriptional regulator n=17 Tax=Bifidobacterium RepID=B3DR49_BIFLD
Transcriptional regulator/sugar kinase
ROK family protein {ECO:0000313|EMBL:EIJ26845.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_008_000G1_scaffold_593_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3800..5320
DNA (1521bp) protein (507aa)
Xylulose kinase n=4 Tax=Bifidobacterium RepID=F8AT32_BIFLN
xylulokinase
Xylulokinase {ECO:0000313|EMBL:AIW44171.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_000G1_scaffold_593_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5368..5493
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GVI1_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44868.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_000G1_scaffold_593_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5514..5861
DNA (348bp) protein (116aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=C2GVI0_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY21556.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_000G1_scaffold_593_8
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5871..6215
DNA (345bp) protein (115aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=V6Y2I7_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95520.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000G1_scaffold_593_9
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6478..6660)
DNA (183bp) protein (61aa)
Uncharacterized protein n=10 Tax=Bifidobacterium RepID=B3DR45_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95519.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000G1_scaffold_593_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6851..8830)
DNA (1980bp) protein (660aa)
Xylosidase n=3 Tax=Bifidobacterium longum RepID=F8AT28_BIFLN
xylosidase
Putative xylosidase {ECO:0000313|EMBL:BAJ71756.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_008_000G1_scaffold_593_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8893..9525)
DNA (633bp) protein (211aa)
Acetyltransferase n=8 Tax=Bifidobacterium longum RepID=B3DR42_BIFLD
sugar acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:KEY21552.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_000G1_scaffold_593_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9598..11370)
DNA (1773bp) protein (591aa)
Glycoside hydrolase n=2 Tax=Bifidobacterium longum RepID=F8AT26_BIFLN
glycoside hydrolase
Putative glycoside hydrolase {ECO:0000313|EMBL:BAJ71758.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_008_000G1_scaffold_593_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11447..13066)
DNA (1620bp) protein (540aa)
Beta-1,4-xylosidase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AT25_BIFLN
beta-1,4-xylosidase
Beta-1,4-xylosidase {ECO:0000313|EMBL:AEI96915.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L1_008_000G1_scaffold_593_14
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13182..14078)
DNA (897bp) protein (299aa)
Sugar ABC transporter permease n=8 Tax=Bifidobacterium RepID=F8AT24_BIFLN
sugar ABC transporter permease
Putative sugar ABC transporter permease component {ECO:0000313|EMBL:CCY96146.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000G1_scaffold_593_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14075..15127)
DNA (1053bp) protein (351aa)
MalF-type ABC sugar transport systems permease component n=9 Tax=Bifidobacterium RepID=B3DR37_BIFLD
MalF-type ABC sugar transport systems permease component
Putative ABC transporter permease component {ECO:0000313|EMBL:BAJ71761.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_008_000G1_scaffold_593_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15221..16534)
DNA (1314bp) protein (438aa)
Putative sugar ABC transporter substrate binding component n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MVG8_BIFL1
sugar ABC transporter substrate-binding protein
Putative sugar ABC transporter substrate binding component {ECO:0000313|EMBL:BAJ71762.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_008_000G1_scaffold_593_17
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16870..17913
DNA (1044bp) protein (348aa)
LacI family transcriptional regulator n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XX07_9BIFI
transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:EFV37850.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L1_008_000G1_scaffold_593_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17922..19121)
DNA (1200bp) protein (400aa)
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family n=5 Tax=Bifidobacterium RepID=D6DBT4_BIFLN
alcohol dehydrogenase
Oxidoreductase {ECO:0000313|EMBL:KHD95663.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L1_008_000G1_scaffold_593_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19477..20826)
DNA (1350bp) protein (450aa)
D-xylose isomerase (EC:5.3.1.5)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Xylose isomerase n=8 Tax=Bifidobacterium longum RepID=D6DBT5_BIFLN
L1_008_000G1_scaffold_593_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21123..21356
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MVH2_BIFL1
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71766.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_008_000G1_scaffold_593_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21391..21693
DNA (303bp) protein (101aa)
Drug resistance transporter, EmrB/QacA family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B4D2_BIFLN
Drug resistance transporter, EmrB/QacA family {ECO:0000313|EMBL:EIJ26225.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
permease
L1_008_000G1_scaffold_593_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21703..22455)
DNA (753bp) protein (251aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=Q8G3Q4_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD99313.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_000G1_scaffold_593_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23432..23836)
DNA (405bp) protein (135aa)
Peptide deformylase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVZ5_BIFLJ
Peptide deformylase {ECO:0000256|RuleBase:RU003335, ECO:0000256|SAAS:SAAS00013131}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
peptide deformylase
L1_008_000G1_scaffold_593_24
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23859..24710)
DNA (852bp) protein (284aa)
2,5-didehydrogluconate reductase n=3 Tax=Bifidobacterium RepID=E8MEV3_BIFL2
2,5-didehydrogluconate reductase
2 5-didehydrogluconate reductase {ECO:0000313|EMBL:CCY95458.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000G1_scaffold_593_25
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24783..25577)
DNA (795bp) protein (265aa)
MFS family major facilitator transporter n=3 Tax=Bifidobacterium RepID=D6ZVZ7_BIFLJ
MFS family major facilitator transporter
Putative transport protein {ECO:0000313|EMBL:CCY95459.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000G1_scaffold_593_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25578..25880)
DNA (303bp) protein (101aa)
Transcriptional regulator, MarR family n=1 Tax=Bifidobacterium longum E18 RepID=V6Y041_BIFLN
transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ESV34101.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L1_008_000G1_scaffold_593_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26245..26499)
DNA (255bp) protein (85aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DR24_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK69962.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_008_000G1_scaffold_593_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26605..27822)
DNA (1218bp) protein (406aa)
ABC-type xylose transport system permease component n=10 Tax=Bifidobacterium RepID=B3DR23_BIFLD
ABC-type xylose transport system, permease component
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EEQ55353.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_008_000G1_scaffold_593_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27822..29375)
DNA (1554bp) protein (518aa)
ABC-type xylose transport system ATPase component n=16 Tax=Bifidobacterium RepID=B3DR22_BIFLD
sugar ABC transporter ATP-binding protein
ABC-type xylose transport system ATPase component {ECO:0000313|EMBL:ACD99305.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_008_000G1_scaffold_593_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29476..30633)
DNA (1158bp) protein (386aa)
ABC-type xylose transport system periplasmic component n=17 Tax=Bifidobacterium RepID=B3DR21_BIFLD
sugar ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEY21534.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Displaying items 1-30 of 60 in total

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