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L1_008_000G1_scaffold_604

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_604_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29..142)
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6Z8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02363.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_604_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(262..1782)
DNA (1521bp) protein (507aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases {ECO:0000313|EMBL:CBL12699.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CBL12699.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA9_9FIRM
L1_008_000G1_scaffold_604_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1798..2427)
DNA (630bp) protein (210aa)
Zn-dependent hydrolases, including glyoxylases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA8_9FIRM
Zn-dependent hydrolases, including glyoxylases
Zn-dependent hydrolases, including glyoxylases {ECO:0000313|EMBL:CBL12698.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_604_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2532..4853)
DNA (2322bp) protein (774aa)
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:CBL12697.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CBL12697.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
(P)ppGpp synthetase, RelA/SpoT family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA7_9FIRM
L1_008_000G1_scaffold_604_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4926..5888)
DNA (963bp) protein (321aa)
Acetyltransferase, GNAT family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G703_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEV02368.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Acetyltransferases, including N-acetylases of ribosomal proteins
L1_008_000G1_scaffold_604_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5913..8156)
DNA (2244bp) protein (748aa)
Fibronectin type III domain n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BLF6_9FIRM
Fibronectin type III domain {ECO:0000313|EMBL:CDA54217.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Fibronectin type III domain.
L1_008_000G1_scaffold_604_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8177..9085)
DNA (909bp) protein (303aa)
dihydroorotate dehydrogenase (subfamily 1) family protein (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Dihydroorotate dehydrogenase n=4 Tax=Roseburia RepID=D4KMM9_9FIRM
L1_008_000G1_scaffold_604_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9085..9861)
DNA (777bp) protein (259aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AT72_9FIRM
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L1_008_000G1_scaffold_604_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9891..11216)
DNA (1326bp) protein (442aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=2 Tax=Roseburia RepID=C7G707_9FIRM
L1_008_000G1_scaffold_604_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11330..12574)
DNA (1245bp) protein (415aa)
GTPase HflX n=2 Tax=Roseburia RepID=D4KMM6_9FIRM
GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_604_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12601..13779)
DNA (1179bp) protein (393aa)
Tetratricopeptide repeat protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G709_9FIRM
Putative tetratricopeptide repeat-containing domain protein {ECO:0000313|EMBL:CDA54212.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_604_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13800..14291)
DNA (492bp) protein (164aa)
Acetyltransferase GNAT family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AT69_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDA54210.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted acetyltransferase
L1_008_000G1_scaffold_604_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14586..15095
DNA (510bp) protein (170aa)
RNA polymerase sigma factor SigV n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZH5_9FIRM
RNA polymerase sigma factor SigV {ECO:0000313|EMBL:CDA54209.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000G1_scaffold_604_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15092..16000
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMM3_9FIRM
Protein of unknown function (DUF3298).
Uncharacterized protein {ECO:0000313|EMBL:CBL08125.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_604_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16030..17382
DNA (1353bp) protein (451aa)
Predicted membrane protein involved in D-alanine export n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZ96_9FIRM
Predicted membrane protein involved in D-alanine export
Predicted membrane protein involved in D-alanine export {ECO:0000313|EMBL:CBL12686.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_604_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17395..18234
DNA (840bp) protein (280aa)
GDSL-like Lipase/Acylhydrolase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZ95_9FIRM
GDSL-like Lipase/Acylhydrolase.
GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:CBL12685.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_604_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18349..19605
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G716_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEV02381.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_604_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19742..20284)
DNA (543bp) protein (181aa)
CarD-like protein n=4 Tax=Roseburia RepID=C7G717_9FIRM
CarD-like protein {ECO:0000313|EMBL:EEV02382.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transcriptional regulators, similar to M. xanthus CarD
L1_008_000G1_scaffold_604_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20536..24321)
DNA (3786bp) protein (1262aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G718_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EEV02383.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Bacterial surface proteins containing Ig-like domains
L1_008_000G1_scaffold_604_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24459..25271)
DNA (813bp) protein (271aa)
Site-specific recombinase XerD n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KML7_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBL08119.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_604_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25494..26519)
DNA (1026bp) protein (342aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Sugar kinases, ribokinase family n=4 Tax=Roseburia RepID=D4KML5_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:EEV02386.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_604_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26868..27887
DNA (1020bp) protein (340aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Sugar kinases, ribokinase family {ECO:0000313|EMBL:CBL08116.1}; EC=2.7.1.45 {ECO:0000313|EMBL:CBL08116.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Sugar kinases, ribokinase family n=2 Tax=Roseburia intestinalis RepID=D4KML4_9FIRM
L1_008_000G1_scaffold_604_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28034..29044)
DNA (1011bp) protein (337aa)
Zn-dependent dipeptidase, microsomal dipeptidase homolog (EC:3.4.13.19)
Zn-dependent dipeptidase, microsomal dipeptidase homolog n=3 Tax=Roseburia RepID=D4KML3_9FIRM
Zn-dependent dipeptidase microsomal dipeptidase homolog {ECO:0000313|EMBL:CDA54192.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_604_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29072..30391)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B5E8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54191.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_604_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30589..30930)
DNA (342bp) protein (114aa)
Transcriptional regulator, PadR family n=3 Tax=Roseburia RepID=D4KML1_9FIRM
transcriptional regulator, PadR family
Transcriptional regulator, PadR family {ECO:0000313|EMBL:CBL08113.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_604_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31378..31698)
DNA (321bp) protein (107aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZE7_9FIRM
L1_008_000G1_scaffold_604_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32146..32502)
DNA (357bp) protein (119aa)
Transcriptional regulator n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KML0_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL08112.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_604_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32527..32811)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B5E4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08111.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_604_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33114..35366)
DNA (2253bp) protein (751aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587, ECO:0000313|EMBL:CBL08110.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMK8_9FIRM
L1_008_000G1_scaffold_604_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35553..36440
DNA (888bp) protein (296aa)
Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G729_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEV02394.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
AraC-type DNA-binding domain-containing proteins
Displaying items 1-30 of 34 in total

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