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L1_008_000G1_scaffold_684

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_684_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..546)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TXI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68014.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_000G1_scaffold_684_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(530..1498)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68015.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Glycosyltransferases involved in cell wall biogenesis
L1_008_000G1_scaffold_684_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1657..1947
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UA45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68016.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_000G1_scaffold_684_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1944..2471
DNA (528bp) protein (176aa)
DNA-binding response regulator n=1 Tax=Clostridium sp. D5 RepID=F0Z2V8_9CLOT
DNA-binding response regulator {ECO:0000313|EMBL:EGB91783.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
two component transcriptional regulator, winged helix family
L1_008_000G1_scaffold_684_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2425..2925
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UGW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68017.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_000G1_scaffold_684_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2938..3504)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68018.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Multimeric flavodoxin WrbA
L1_008_000G1_scaffold_684_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3805..4485)
DNA (681bp) protein (227aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TXI7_9FIRM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CCZ68019.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
short-chain dehydrogenase/reductase SDR
L1_008_000G1_scaffold_684_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4452..5477)
DNA (1026bp) protein (342aa)
Putative dihydroflavonol 4-reductase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQT3_9FIRM
Putative dihydroflavonol 4-reductase {ECO:0000313|EMBL:CCZ68020.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
NAD-dependent epimerase/dehydratase
L1_008_000G1_scaffold_684_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5589..5915)
DNA (327bp) protein (109aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
3 N domain protein glycosyl hydrolase family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UA48_9FIRM
L1_008_000G1_scaffold_684_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5996..6643)
DNA (648bp) protein (216aa)
Beta-glucosidase (EC:3.2.1.21)
Beta-glucosidase-related glycosidase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UGW2_9FIRM
Beta-glucosidase-related glycosidase {ECO:0000313|EMBL:CCZ68022.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_000G1_scaffold_684_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6765..8642)
DNA (1878bp) protein (626aa)
Uncharacterized protein n=2 Tax=Ruminococcus gnavus RepID=A7B4H6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20126.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
myosin-cross-reactive antigen
L1_008_000G1_scaffold_684_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8767..9333)
DNA (567bp) protein (189aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BZC7_RUMGN
Putative dihydroxyacetone kinase regulator {ECO:0000313|EMBL:EDN77254.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
transcriptional regulator
L1_008_000G1_scaffold_684_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9586..10605
DNA (1020bp) protein (340aa)
Inosine-uridine nucleoside N-ribohydrolase (EC:3.2.2.1)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BYC8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48563.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_000G1_scaffold_684_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10602..11168
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B4I0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ68026.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_000G1_scaffold_684_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11180..11869
DNA (690bp) protein (230aa)
Radical SAM domain protein n=4 Tax=Clostridiales RepID=A7B4I1_RUMGN
TIGR01210 family protein {ECO:0000313|EMBL:ETD20122.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
radical SAM protein
L1_008_000G1_scaffold_684_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11888..12733)
DNA (846bp) protein (282aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B4I2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20121.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L1_008_000G1_scaffold_684_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12761..13705)
DNA (945bp) protein (315aa)
Peptidase, C39 family n=4 Tax=Clostridiales RepID=A7B4I3_RUMGN
Peptidase, C39 family {ECO:0000313|EMBL:EDN77260.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L1_008_000G1_scaffold_684_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13738..14061)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68030.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_000G1_scaffold_684_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14138..15421)
DNA (1284bp) protein (428aa)
phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31 3.5.4.19)
Phosphoribosyl-ATP diphosphatase n=3 Tax=Clostridiales RepID=R5UA60_9FIRM
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_000G1_scaffold_684_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15436..16026)
DNA (591bp) protein (197aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=2 Tax=Clostridiales RepID=A7B4I6_RUMGN
L1_008_000G1_scaffold_684_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16029..17327)
DNA (1299bp) protein (433aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4I7_RUMGN
L1_008_000G1_scaffold_684_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17324..17974)
DNA (651bp) protein (217aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TXJ6_9FIRM
L1_008_000G1_scaffold_684_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17971..19239)
DNA (1269bp) protein (423aa)
ATP phosphoribosyltransferase regulatory subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQU7_9FIRM
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_000G1_scaffold_684_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19317..19850)
DNA (534bp) protein (178aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Holliday junction resolvase RecU n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UA62_9FIRM
Penicillin-binding protein-related factor A, putative recombinase
L1_008_000G1_scaffold_684_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19850..20815)
DNA (966bp) protein (322aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BZ69_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48575.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_000G1_scaffold_684_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20832..21413)
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B4J2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ68038.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_000G1_scaffold_684_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21427..22194)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TXK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68039.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Short-chain dehydrogenases of various substrate specificities
L1_008_000G1_scaffold_684_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22191..24089)
DNA (1899bp) protein (633aa)
UPF0313 protein BN481_00865 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQV0_9FIRM
UPF0313 protein BN481_00865 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Fe-S oxidoreductase
L1_008_000G1_scaffold_684_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24094..24768)
DNA (675bp) protein (225aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5UA66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48579.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
HAD family hydrolase
L1_008_000G1_scaffold_684_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24744..25469)
DNA (726bp) protein (242aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=3 Tax=Clostridiales RepID=F7JWH7_9FIRM
Displaying items 1-30 of 55 in total

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