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L1_008_000G1_scaffold_947

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_947_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C5ECT9_BIFLI
Transposase
Uncharacterized protein {ECO:0000313|EMBL:EEQ55833.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_008_000G1_scaffold_947_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(203..412)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZIB2_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD76131.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
aminotransferase
L1_008_000G1_scaffold_947_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(446..970)
DNA (525bp) protein (175aa)
DNA binding domain, excisionase family n=2 Tax=Bifidobacterium breve RepID=D4BQ85_BIFBR
excisionase/Xis
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EPD76130.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_947_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1169..2365
DNA (1197bp) protein (399aa)
UDP-galactopyranose mutase n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AIF9_BIFBR
UDP-galactopyranose mutase {ECO:0000313|EMBL:EPD76129.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
UDP-galactopyranose mutase
L1_008_000G1_scaffold_947_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2473..3408)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Bifidobacterium breve RepID=UPI00036DB47A
putative secreted protein
Hypothetical secreted protein {ECO:0000313|EMBL:ABE96450.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_008_000G1_scaffold_947_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3561..4286
DNA (726bp) protein (242aa)
membrane protein n=1 Tax=Bifidobacterium breve RepID=UPI0002E07B46
putative membrane spanning protein
Putative membrane spanning protein {ECO:0000313|EMBL:AHJ21982.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_947_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4376..5197
DNA (822bp) protein (274aa)
FAH family protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E3Z4_BIFBR
Fumarylacetoacetate hydrolase family protein
FAH family protein {ECO:0000313|EMBL:ERI87086.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_000G1_scaffold_947_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5214..6143)
DNA (930bp) protein (310aa)
Transporter, auxin efflux carrier family protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DZC0_BIFBR
Transporter, auxin efflux carrier family protein {ECO:0000313|EMBL:ERI87087.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Permease
L1_008_000G1_scaffold_947_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6566..9235
DNA (2670bp) protein (890aa)
ATP-dependent chaperone protein ClpB n=2 Tax=Bifidobacterium breve RepID=D4BQ93_BIFBR
clpB; ClpB protein
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_000G1_scaffold_947_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9347..9460
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZH86_BIFBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76123.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_947_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9703..10800
DNA (1098bp) protein (366aa)
Putative glutamyl-queuosine tRNA(Asp) synthetase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C8E6_BIFBA
Putative tRNA synthase {ECO:0000313|EMBL:BAR00825.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Glutamyl-tRNA synthetase
L1_008_000G1_scaffold_947_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10826..11935
DNA (1110bp) protein (370aa)
Glycerophosphodiester phosphodiesterase family protein n=2 Tax=Bifidobacterium breve RepID=H3L100_BIFBR
Glycerophosphoryl diester phosphodiesterase
Uncharacterized protein {ECO:0000313|EMBL:EPD76121.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_947_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11977..12456)
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Ribosomal RNA large subunit methyltransferase H n=4 Tax=Bifidobacterium breve RepID=F6C8E4_BIFBA
Hypothetical protein
L1_008_000G1_scaffold_947_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12693..13433)
DNA (741bp) protein (247aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQ97_BIFBR
L1_008_000G1_scaffold_947_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13817..14137
DNA (321bp) protein (107aa)
Glucose transport system permease protein n=2 Tax=Bifidobacterium breve RepID=F9XZ61_BIFBU
Glucose transport system permease protein
Glucose transport system permease protein {ECO:0000313|EMBL:AHJ21971.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_947_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14189..16213
DNA (2025bp) protein (675aa)
Amylo-alpha-1,6-glucosidase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C8E1_BIFBA
Hypothetical protein (possible glycogen debranching enzyme)
Uncharacterized protein {ECO:0000313|EMBL:AHJ21970.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_947_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17068..17889)
DNA (822bp) protein (274aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=S2ZI96_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE96437.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_008_000G1_scaffold_947_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17879..19294)
DNA (1416bp) protein (472aa)
NTP pyrophosphohydrolase n=1 Tax=Bifidobacterium breve RepID=UPI00036A2E27
Phosphohydrolase (MutT/nudix family protein)
Phosphohydrolase (MutT/nudix family protein) {ECO:0000313|EMBL:AHJ21968.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_947_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19449..21686)
DNA (2238bp) protein (746aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Polyphosphate kinase n=4 Tax=Bifidobacterium breve RepID=F6C8D8_BIFBA
Polyphosphate kinase
L1_008_000G1_scaffold_947_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22091..23497
DNA (1407bp) protein (469aa)
Ser/Thr protein phosphatase family protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0Y8_BIFBR
Phosphoesterase
Phosphoesterase {ECO:0000313|EMBL:ABE96434.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_008_000G1_scaffold_947_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23631..24440)
DNA (810bp) protein (270aa)
Transcriptional regulator, IclR family n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0Y7_BIFBR
Transcriptional regulator, IclR family
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AHJ21965.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_947_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24638..26041
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
3-isopropylmalate dehydratase large subunit n=4 Tax=Bifidobacterium breve RepID=F6C8D4_BIFBA
leuC; 3-isopropylmalate dehydratase large subunit
L1_008_000G1_scaffold_947_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26189..26878
DNA (690bp) protein (230aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
3-isopropylmalate dehydratase small subunit n=4 Tax=Bifidobacterium breve RepID=D4BQB2_BIFBR
3-isopropylmalate dehydratase small subunit
L1_008_000G1_scaffold_947_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26937..27572)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CR67_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI87030.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_000G1_scaffold_947_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27806..28309
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZH69_BIFBR
putative membrane spanning protein
Putative membrane spanning protein {ECO:0000313|EMBL:AHJ21961.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_947_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28372..29535
DNA (1164bp) protein (388aa)
Dihydroorotate oxidase n=4 Tax=Bifidobacterium breve RepID=F6C8D0_BIFBA
Dihydroorotate dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:EPD76107.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_947_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29658..30407)
DNA (750bp) protein (250aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium breve RepID=F6C8C9_BIFBA
ATP-binding protein of ABC transporter system for amino acids
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE88412.1}; Putative ABC transporter ATP-binding component {ECO:0000313|EMBL:BAR00805.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_000G1_scaffold_947_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30462..31016)
DNA (555bp) protein (185aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=F6C8C8_BIFBA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ21958.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_947_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31105..31890)
DNA (786bp) protein (262aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium breve RepID=F6C853_BIFBA
Permease protein of ABC transporter system for amino acids
ABC transporter, permease protein {ECO:0000313|EMBL:AEF26587.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_000G1_scaffold_947_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31895..32584)
DNA (690bp) protein (230aa)
ABC transporter, permease protein n=4 Tax=Bifidobacterium breve RepID=F6C852_BIFBA
Permease protein of ABC transporter system for amino acids
Permease protein of ABC transporter system for amino acids {ECO:0000313|EMBL:ABE96425.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Displaying items 1-30 of 63 in total

View Taxonomy