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L1_008_000G1_scaffold_968

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_968_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..94
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZHU2_BIFBR
Conserved hypothetical protein, ATPase
AAA domain protein {ECO:0000313|EMBL:EIJ24299.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_008_000G1_scaffold_968_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(663..1328)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BLG7_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EFE90155.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Hypothetical protein with DUF45 domain, zink metallo protease
L1_008_000G1_scaffold_968_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1939..2328
DNA (390bp) protein (130aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=F6C5C5_BIFBA
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:AEF27584.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_000G1_scaffold_968_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2288..2932
DNA (645bp) protein (215aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=F6C5C5_BIFBA
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:AEF27584.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_000G1_scaffold_968_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3038..4384
DNA (1347bp) protein (449aa)
Glutamate dehydrogenase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BLG5_BIFBR
NADP-specific glutamate dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_000G1_scaffold_968_6
unknown

Not on your lists

4638..4862
DNA (225bp) protein (75aa)

This feature has no annotations

L1_008_000G1_scaffold_968_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4779..6017)
DNA (1239bp) protein (413aa)
VanZ-like protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BLG3_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:BAQ99050.1}; VanZ-like protein {ECO:0000313|EMBL:EFE90151.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
putative membrane spanning protein, VanZ family
L1_008_000G1_scaffold_968_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6450..9581)
DNA (3132bp) protein (1044aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
beta-galactosidase n=1 Tax=Bifidobacterium breve RepID=UPI0002D7859F
Beta-galactosidase
L1_008_000G1_scaffold_968_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9925..10326
DNA (402bp) protein (134aa)
lactose permease n=1 Tax=Bifidobacterium breve RepID=UPI0002DCD75B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF26937.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_000G1_scaffold_968_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10595..11608
DNA (1014bp) protein (338aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2C7U3_BIFBR
Transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ERI86564.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_000G1_scaffold_968_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11682..12233)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BLF7_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EFE90145.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
putative membrane spanning protein
L1_008_000G1_scaffold_968_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12302..13258)
DNA (957bp) protein (319aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
DNA gyrase subunit A n=4 Tax=Bifidobacterium breve RepID=F6C5B7_BIFBA
gyrA suspected. See adjacent gene [L1_008_000G1_scaffold_968_13].
L1_008_000G1_scaffold_968_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(13237..14841)
DNA (1605bp) protein (535aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
DNA gyrase subunit A n=1 Tax=Bifidobacterium breve RepID=UPI0002D4B35D
gyrA1; DNA gyrase subunit A
L1_008_000G1_scaffold_968_14
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15016..15555)
DNA (540bp) protein (180aa)
gyrB_1; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
DNA gyrase subunit B n=1 Tax=Bifidobacterium breve RepID=UPI0003019009
L1_008_000G1_scaffold_968_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15555..16958)
DNA (1404bp) protein (468aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
DNA gyrase subunit B n=4 Tax=Bifidobacterium RepID=D4BLF5_BIFBR
DNA gyrase subunit B
L1_008_000G1_scaffold_968_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17093..17563)
DNA (471bp) protein (157aa)
Uncharacterized protein n=5 Tax=Bifidobacterium breve RepID=F6C5B5_BIFBA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ20266.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_968_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17560..18666)
DNA (1107bp) protein (369aa)
DNA replication and repair protein RecF n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZC4_BIFBU
recF; DNA replication and repair protein recF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|SAAS:SAAS00122784}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_008_000G1_scaffold_968_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18742..19866)
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
DNA polymerase III subunit beta n=5 Tax=Bifidobacterium breve RepID=F6C5B3_BIFBA
DNA polymerase III, beta chain
L1_008_000G1_scaffold_968_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20443..21909)
DNA (1467bp) protein (489aa)
Chromosomal replication initiator protein DnaA n=6 Tax=Bifidobacterium breve RepID=F6C5B2_BIFBA
Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_000G1_scaffold_968_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


22228..22362
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=5 Tax=Bifidobacterium breve RepID=F6C989_BIFBA
LSU ribosomal protein L34P
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_968_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22394..22744
DNA (351bp) protein (117aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Ribonuclease P protein component n=4 Tax=Bifidobacterium breve RepID=F6C988_BIFBA
Ribonuclease P protein component
L1_008_000G1_scaffold_968_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23062..24072
DNA (1011bp) protein (337aa)
Inner membrane protein (Preprotein translocase subunit YidC) n=4 Tax=Bifidobacterium breve RepID=F9Y0F6_BIFBU
Inner membrane protein (Preprotein translocase subunit YidC)
Inner membrane protein (Preprotein translocase subunit YidC) {ECO:0000313|EMBL:AHJ22094.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_968_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24195..24731
DNA (537bp) protein (179aa)
R3H domain protein n=3 Tax=Bifidobacterium breve RepID=F6C986_BIFBA
Jag protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76300.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_968_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24855..25520
DNA (666bp) protein (222aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Ribosomal RNA small subunit methyltransferase G n=5 Tax=Bifidobacterium breve RepID=F6C985_BIFBA
Methyltransferase gidB (Glucose inhibited division protein B)
L1_008_000G1_scaffold_968_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25773..26741
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZHS7_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD76298.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
parA3; Chromosome partitioning protein parA
L1_008_000G1_scaffold_968_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26741..28006
DNA (1266bp) protein (422aa)
ParB-like partition protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3A285_BIFBR
ParB-like partition protein {ECO:0000313|EMBL:EPD76297.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Chromosome partitioning protein parB
L1_008_000G1_scaffold_968_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28123..29142)
DNA (1020bp) protein (340aa)
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L2B2_BIFBR
Thioredoxin reductase
Thioredoxin reductase {ECO:0000313|EMBL:AHJ20255.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_008_000G1_scaffold_968_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29344..33123)
DNA (3780bp) protein (1260aa)
Integral membrane protein MviN n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZPJ6_BIFBR
putative membrane spanning protein with virulence factor mviN domain
Putative membrane spanning protein with virulence factor mviN domain {ECO:0000313|EMBL:AHJ22088.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_968_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33120..35312)
DNA (2193bp) protein (731aa)
hypothetical protein n=1 Tax=Bifidobacterium breve RepID=UPI0003676683
putative secreted protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:ABE96578.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_008_000G1_scaffold_968_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35270..36241)
DNA (972bp) protein (324aa)
Mutator mutT protein n=2 Tax=Bifidobacterium breve RepID=F6C979_BIFBA
Phosphohydrolase (MutT/nudix family protein)
Mutator mutT protein {ECO:0000313|EMBL:EPD76293.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Displaying items 1-30 of 36 in total

View Taxonomy