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L1_008_000G1_scaffold_286_13

Organism: L1_008_000G1_public_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 18
Location: comp(12423..13430)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoS n=3 Tax=Pseudomonas RepID=I4K477_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 335.0
  • Bit_score: 654
  • Evalue 4.20e-185
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 335.0
  • Bit_score: 654
  • Evalue 5.80e-185
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 97.3
  • Coverage: 335.0
  • Bit_score: 634
  • Evalue 1.30e-179

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Taxonomy

Pseudomonas fluorescens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1008
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTTATGGAGGCCGGTATCGATTTGGAAACGATGTCAGATAATGAAGGGGTATCACCACCTTCAGTTCGCACCAAATCCAAGAATGCTGCCGCGTTGAAGCAGCACAAGTACGTTGACTATACGCGGGCGCTCGACGCGACCCAGTTGTACCTCAATGAAATCGGCTTTTCCCCTCTGTTGACCCCCGAAGAAGAAGTCCATTTTGCGCGTCTGTCGCAAAAGGGCGATCCGGCTGGGCGTAAGCGCATGATTGAAAGCAACCTGCGCCTGGTGGTGAAAATCGCCCGACGCTACGTCAATCGTGGGCTGTCCCTGTTGGACCTGATCGAGGAGGGCAACCTGGGCTTGATCCGGGCTGTGGAAAAATTCGACCCTGAGCGGGGCTTCCGTTTCTCCACCTATGCCACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAATCAGACCCGCACGATCCGGTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGGGCGGCGCGTGAGCTGACGCAAAAACTCGATCATGAACCTTCGCCTGAAGAGATCGCCAACCTGCTGGAAAAACCGGTAGGGGAGGTCAAGCGCATGCTCGGCCTTAACGAGCGTGTCTCTTCGGTCGATGTCTCGCTGGGGCCGGACTCGGATAAGACCCTGCTGGACACCCTGACCGATGATCGTCCGACGGACCCTTGCGAGCTGTTGCAGGACGATGATCTTTCCCAAAGTATTGACCAGTGGCTCTCAGAGCTCACGGACAAGCAGCGTGAAGTGGTGATTCGCCGCTTCGGCCTGCGCGGTCATGAGAGCAGCACTCTGGAGGATGTAGGTCTGGAGATTGGTCTGACCCGTGAGCGGGTGCGGCAGATCCAGGTAGAGGGCCTCAAGCGCTTGCGCGAGATCCTGGAGAAGAATGGCTTGTCGAGTGAGTCGTTGTTCCAATAA
PROTEIN sequence
Length: 336
MALSKEVPEFDIDDEVLLMEAGIDLETMSDNEGVSPPSVRTKSKNAAALKQHKYVDYTRALDATQLYLNEIGFSPLLTPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ*