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L1_008_000G1_scaffold_1233

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_1233_1
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(331..720)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W875_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC94338.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L1_008_000G1_scaffold_1233_2
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

969..1694
DNA (726bp) protein (242aa)
Transcriptional regulator, XRE family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W874_ATOPD
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EWC91921.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
XRE family transcriptional regulator
L1_008_000G1_scaffold_1233_3
unknown

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comp(1869..2141)
DNA (273bp) protein (91aa)

This feature has no annotations

L1_008_000G1_scaffold_1233_4
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(2954..3805)
DNA (852bp) protein (284aa)
Transposase n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N6D7_SLAHD
Integrase core domain protein {ECO:0000313|EMBL:EWC92405.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
transposase
L1_008_000G1_scaffold_1233_5
Atopobium parvulum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(3826..4323)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9P7_ATOPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV50835.1}; TaxID=521095 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI; 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus).;"
L1_008_000G1_scaffold_1233_6
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

4627..5112
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN17_9ACTN
Flavodoxin {ECO:0000313|EMBL:EWC94337.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
putative flavodoxin
L1_008_000G1_scaffold_1233_7
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5393..5638)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W869_ATOPD
PF11213 family protein {ECO:0000313|EMBL:EWC94336.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L1_008_000G1_scaffold_1233_8
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5638..7008)
DNA (1371bp) protein (457aa)
Beta-lactamase domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W868_ATOPD
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EWC91927.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
beta-lactamase domain-containing protein
L1_008_000G1_scaffold_1233_9
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(7048..7929)
DNA (882bp) protein (294aa)
30S ribosomal protein S12 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W867_ATOPD
Esterase domain protein {ECO:0000313|EMBL:EWC91925.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
30S ribosomal protein S12
L1_008_000G1_scaffold_1233_10
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7931..10183)
DNA (2253bp) protein (751aa)
Sodium/hydrogen exchanger n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W866_ATOPD
Transporter, CPA2 family {ECO:0000313|EMBL:EWC94339.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
sodium/hydrogen exchanger
L1_008_000G1_scaffold_1233_11
unknown

Not on your lists

comp(10150..10401)
DNA (252bp) protein (84aa)

This feature has no annotations

L1_008_000G1_scaffold_1233_12
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10779..11909)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W865_ATOPD
Putative membrane protein {ECO:0000313|EMBL:EWC94341.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L1_008_000G1_scaffold_1233_13
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12447..13505
DNA (1059bp) protein (353aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W864_ATOPD
Putative alcohol dehydrogenase {ECO:0000313|EMBL:EWC93768.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
Alcohol dehydrogenase zinc-binding domain-containing protein
L1_008_000G1_scaffold_1233_14
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13618..14754
DNA (1137bp) protein (379aa)
Cobalamin synthesis protein P47K n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W863_ATOPD
CobW/P47K family protein {ECO:0000313|EMBL:EWC93763.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
cobalamin synthesis protein P47K
L1_008_000G1_scaffold_1233_15
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15277..16641)
DNA (1365bp) protein (455aa)
UPF0210 protein Apar_1221 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W858_ATOPD
UPF0210 protein HMPREF1493_1289 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L1_008_000G1_scaffold_1233_16
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16831..17967
DNA (1137bp) protein (379aa)
Transcriptional regulator, LacI family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W857_ATOPD
Periplasmic binding protein and sugar binding domain of the LacI family protein {ECO:0000313|EMBL:EWC92379.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
LacI family transcriptional regulator
L1_008_000G1_scaffold_1233_17
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18612..21083
DNA (2472bp) protein (824aa)
putative phosphoketolase (EC:4.1.2.22)
Fructose-6-phosphate phosphoketolase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W856_ATOPD
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase {ECO:0000313|EMBL:EWC96056.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Displaying 17 items

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