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L1_008_000G1_scaffold_1925

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_1925_1
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..545
DNA (543bp) protein (181aa)
hsdS-2; type I restriction enzyme, S subunit (EC:3.1.21.3)
Type I restriction enzyme, S subunit n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZQ56_9ACTN
Phage family integrase {ECO:0000313|EMBL:KFI70352.1}; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
L1_008_000G1_scaffold_1925_2
Actinomyces turicensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(542..1468)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Actinomyces turicensis ACS-279-V-Col4 RepID=K0YQM3_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EJZ85768.1}; TaxID=883077 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces turicensis ACS-279-V-Col4.;"
Integrase
L1_008_000G1_scaffold_1925_3
Anaerovibrio lipolyticus, Anaerovibrio, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1452..2102)
DNA (651bp) protein (217aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2R6_9FIRM
Type I restriction-modification system, specificity subunit S {ECO:0000313|EMBL:KHM53141.1}; TaxID=82374 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Anaerovibrio.;" source="Anaerovibrio lipolyticus.;"
Type I restriction modification DNA specificity domain-containing protein
L1_008_000G1_scaffold_1925_4
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(2099..5299)
DNA (3201bp) protein (1067aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EBA40192.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EBA40192.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8H5_9ACTN
type I site-specific deoxyribonuclease, HsdR family
L1_008_000G1_scaffold_1925_5
unknown

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5473..5703
DNA (231bp) protein (77aa)

This feature has no annotations

L1_008_000G1_scaffold_1925_6
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(5710..5880)
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:EWC93125.1}; Flags: Fragment;; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
L1_008_000G1_scaffold_1925_7
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(6017..6859)
DNA (843bp) protein (281aa)
Transcriptional regulator, RpiR family n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2N913_CORGP
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:AEB07613.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L1_008_000G1_scaffold_1925_8
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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7021..7926
DNA (906bp) protein (302aa)
Phosphogluconate dehydrogenase (Decarboxylating) {ECO:0000313|EMBL:EEE17304.1}; EC=1.1.1.44 {ECO:0000313|EMBL:EEE17304.1};; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
6-phosphogluconate dehydrogenase (EC:1.1.1.44)
Phosphogluconate dehydrogenase (Decarboxylating) n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM65_9ACTN
L1_008_000G1_scaffold_1925_9
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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7928..8395
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Atopobium RepID=N2BJV7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EMZ40496.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;"
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
L1_008_000G1_scaffold_1925_10
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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8451..9719
DNA (1269bp) protein (423aa)
Putative sugar-specific permease, SgaT/UlaA n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM67_9ACTN
Putative sugar-specific permease, SgaT/UlaA {ECO:0000313|EMBL:EEE17443.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
PTS system transporter subunit IIC
L1_008_000G1_scaffold_1925_11
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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9742..10017
DNA (276bp) protein (92aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM68_9ACTN
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EEE17291.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
Pentitol PTS system enzyme II B component-like protein
L1_008_000G1_scaffold_1925_12
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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10304..10627
DNA (324bp) protein (108aa)
Protein tyrosine/serine phosphatase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W926_ATOPD
Tyrosine phosphatase domain protein {ECO:0000313|EMBL:EWC94447.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
protein tyrosine/serine phosphatase
L1_008_000G1_scaffold_1925_13
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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10618..11442
DNA (825bp) protein (275aa)
Protein tyrosine/serine phosphatase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W926_ATOPD
Tyrosine phosphatase domain protein {ECO:0000313|EMBL:EWC94447.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
protein tyrosine/serine phosphatase
L1_008_000G1_scaffold_1925_14
Streptococcus ratti, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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11625..12170
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Streptococcus ratti FA-1 = DSM 20564 RepID=J3JQN1_STRRT
Uncharacterized protein {ECO:0000313|EMBL:EMP70269.1}; TaxID=699248 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus ratti FA-1 = DSM 20564.;"
L1_008_000G1_scaffold_1925_15
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12457..13704
DNA (1248bp) protein (416aa)
PTS system cellobiose-specific transporter subunit IIC (EC:2.7.1.69)
PTS system, cellobiose-specific IIC component n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZQ32_9ACTN
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Displaying 15 items

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