ggKbase home page

L1_008_000G1_scaffold_81_95

Organism: dasL1_008_000G1_concoct_76_fa

near complete RP 47 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38
Location: comp(88751..93181)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.9
  • Coverage: 1476.0
  • Bit_score: 2916
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W807_ATOPD similarity UNIREF
DB: UNIREF100
  • Identity: 99.0
  • Coverage: 1476.0
  • Bit_score: 2888
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 99.0
  • Coverage: 1476.0
  • Bit_score: 2888
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Atopobium sp. ICM42b → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 4431
GTGGCAGATTTCGATTCCACTGAATTTGACGCTATTAAAATTTCTCTAGCGTCTGCTGATGATATCCGCGGTTGGTCCTATGGCGAGGTAAAGAAGCCTGAGACCATCAACTACCGTACCCTTAAGCCAGAAAAGGACGGCCTTTTCTGCGAGAAGATCTTTGGACCTGTAAGGGACTGGGAGTGCGCCTGCGGTAAGTACAAAGGCATTCGCTTCAAGGGCATTACCTGCGAGCGCTGCGGTGTTGAAGTAACCACCGCAAAGGTTCGTCGTGACCGCATGGGCCACATCGAGCTTGCTGCTCCTGTAAGCCACATTTGGTACTTCAAGAGTCCAACCAGCTTCCCTCTGGCACGTCTTCTTGACATCAAGAGCAAGGACCTCGAGAAAGTCCTCTACTTTGCATCTTACGTAATCACCAGTGTTGACGCTGAGGCACGTGAGGCTGACGTAGACGATCTTCGTGAGGAGCTTGCAGCAGACCTCGAAGAGCTTGATGCAGAGCGTGACGATCAGATCGCACGTCTTCGCGAGCAGGGCCAGCCACAGGATGACGAGTTTGGCGATTTTGAGCCTCTTTCTGAGGACGAGATTCGTGCAGGCGTCGCTGATCTTGAGGAAGAGTACGAGGAAGAGAAGACACTTCGTCGTGAGGCTTTCGAGAAGTTCATGCAGCTTGAGACCAGAGAGCTCATCTCCGATGAGGGTCTGTTCTCCGAGCTTAAACGCTACTATGGCATCTACTTCAAGGGTGGTATGGGCGCAGAGGCAGTACGTGACCTTCTCTCCAACATTGACCTTGAGAAAGAGGCCAAGGAGCTCCGCGCTATTATCGCCAATGAGGATGCTCAGAAGCAGAAGCGCGAGAAGGCCATTAAGCGCCTTGAGATTGTTGACGCTTTCCTTAAGGGCGGCAACGATCCAGCTAACATGATCCTTGACGTTGTTCCAGTTATTCCACCTGATCTTCGTCCTATGGTTCAGCTTGATGGTGGCCGTTTTGCAGCTTCCGACTTAAACGATTTGTATCGTCGTGTTATTAACCGTAACAATCGTCTTAAGCGCCTGCTTGACCTTGAGGCACCTTCTATCATTGTTAACAACGAGAAGCGCATGCTTCAGGAGTCCGTTGACGCTCTGTTTGACAACGGTCGCCGCGGTCGTCCAGTCACTGGTCGTGGTGGACGTCCTCTGAAGTCTCTTGCTGAGGCTCTTAAGGGTAAGCAGGGTCGCTTCCGTCAGAACCTTCTGGGTAAGCGTGTTGACTACTCTGGCCGTTCCGTCATTGTTGTTGACCCACACCTGAAGCTGCACCAGTGCGGCCTTCCATCTGCTATGGCACTTGAGCTCTTCAAGCCATTTGTCATGCGTCGTTTGGTTGAGCTCCGCAAGGTTGAAAACATTAAGGGCGCAAAGCGCGCTATTGACCGTGGTACCCCAGTTGTTTGGGACGTTCTGGATGAGGTCATTCAGGACCGCCTCGTTCTTCTCAACCGCGCACCTACCCTTCACCGTCTGTCTATCCAGGCATTTGAGCCAGTCCTTATCGAGGGTAAGGCAATCCACCTGCACCCACTGGTTTGCGCACCATTCAACGCAGACTTCGACGGCGATCAGATGTCTGTCCACGTGCCACTTTCTACTCAGGCACAGACAGAGGCTCGCATTCTGATGCTCTCCAGCAACAACCTCAGAAGCCCTGCTTCTGGTAAGGTTCTGACCGTTCCTTCTCAGGATATGGTCTTTGGTGTCTACTACCTCACTTCCGAGAAGACCGGTGAAGACGCTAAGACTCTTACCTTTGCAAGCTTTGAGGATGCTCTTCTGGCTATTGAGGCCAACCGTGACCTTGATCTTCAGGCAAAGGTTGTTGTCCGCGTAAGCTCCAAGGATGCAAACGTTGCTGATAGCGATCGTGCTATCTTCCGCGTTATGACTGGCCGCGGTCAGTATGAGGACCTGGACGTTACTGAGGGTACTAAGCGTTTTGAGACCACTGTTGGTCGCATTATCTTCAACCGTCAGTGCCTGCCAGAGGATTACCCATACATCAACTACAAGATGGTTAAGTCCGACATTGGTGTTCTGGTCAACGATTGCTGCGACCGTTACCCAATGGCTGATGTTGAGCCAATTCTTGATAACATCAAGAAGACTGGTTTCCACTATGCAACTCTTGCTGGTCTGACCGTTTCTGTTTGGGACGCTGTCATTCCTCCACATAAGCCACAGCTGCTTCAGGAGGCACAGGACCGCGTTGACCAGATCAACGAGTACTACGAGGACGGCTTCCTTTCCGAGCGAGAGCGTCACGTTGAGGTTGTTAACGCATGGACCGAGTGCACCGATCTTCTCGGCTCTGAGATGCTTACAGGCTTTGCAGAGAACAACCCAATTTACATGATGGCTGACTCTGGAGCTCGTGGTTCTAAGACACAGCTTCGCCAGCTTGCTGGTATGCGAGGCCTGATGGCGGATATGTCCGGTGAAACCATCGACCTTCCAATTAAGGCAAACTTCCGCGAGGGTCTTGAGCCTCTCGAGTACTTCATTTCTACCTACGGCGCTCGTAAGGGTCTGGTAGATACCGCATCCCACACCTCCGACTCTGGTTACCTGACTCGTCGACTCGTCGACGTTGCACAGGACGTCATTGTCCGCGAGGAGGACTGCGGCACTGATGAGGCAGTTACCTATCCTCTGATTAAGCCTGGTCAGACTTCTGTTGATACTGACCTGATTGGCCGCTGCACCCTTGAGGATGTCTGCGATCCAAACACTGGCGAGGTTCTTATCCCTGCTGGTGGCTATGTTGAGTCCAAGCAGGATCTTGAGCGTCTTGTTGAGCACGGCCTTGCTAAGGTTCAGCTCCGCGCGCTTCTGACCTGTAAGTCTAAGTACGGCGTCTGCCAGAAGTGCTACGGCTGGGATCTTTCCACCCGTCGTCCTGTCAACATTGGTACTGCAGTTGGTATTATCGCAGCTCAGTCCATTGGTGAGCCTGGTACTCAGTTGACCATGCGTACCATTCACTCCGGTGGTGTTGCAGGCGCAGACGATATTACGCAGGGTCTTCCTACCGTTGCTCGTATGTTCGACGTCGTCGGCAACGTCAACGAGAAGATTCTTGGCCGCGAGGCTGACCTGGCTCCTGTTTCTGGTGTTCTTCACATTACCCCAGAGACCACCGAGTACCTGCTGCGTATTGTTGATGCAGACGATGCTTCCCGTGTCATCGAGGAGTGGCGTGTACCTGCATCTGTCCGCTTCATGCCTGGCATTGAGGATGGCGTTGTTGTCCGTGCTGGTGACCAGATTACCCGCGGCTTCGTCAACTTCCGTATGCTCCGTCGACTCACTGACATTGAGTCCACTATGCACACCTTCGTTGAGTCCGTTAAGGACGTCTATACCTCCCAGGGTGTAGAACTCAACGATAAGCACATCGAGGTTATCGCACGTCAGATGCTTCGTCGTGTTCAGGTTACCAACCCAGGTGACTCTTCGTACCTGCTTGGTCAGTATGTGGACCGCTATGTCTTTGCAGAGACTGTCCAGAACATTGCCCTTGCCGGTGGTACTCCACCAGAGGCAGAGCCAGCAATCCTTGGTACTCTGAAGGTTGCAAGCTCTATCGATTCTTGGCTCTCCAGTGCATCGTTCATCCGTACTGCAGGCGTTCTTACCTCTGCAGCCATTGAGGGCGACGTTGACCACCTGCTTGACCTTAAGTCCAACGTTATTGTTGGTAAGCAGATTCCTGCAGGTACGGGTCTCTCCGCATACAACGATGTTGAGCTTACGTACCACGGCACCAAGATTGATGGCCCAACCTCTTCTCTTGCTAAGTCTCTTCCAGACTGGGCACCAGCAGAGCTTAAGGACATCGAGGAGCAGCTTCCTAAGCAGCTTGACTGGGTCAATGAGGATTACAACGGTGGCGTTTACTCCAAGAATGGCCGCACGCTTTCAAGCGAGGACGCAAAGCTGTACCTTTTCGACGATCTTGGCGTGTCACAGCGTTGGACCAACAAGTTCAGCGAGGTTGGCATTGAGACCGTAGGCGATCTTATTGGCAAGACTGAGGAAGACCTGCTTCGCATCGATGGTATTGGTGCAAAGGCAATCGAGGAGCTCCGCGATGGCCTTGAGGCTCGTAACCTCCTCTACATCCTTGAGCCAGAAGAGGATGAGGCTGATTCTGAGGATCTTTCTCAGCTGCTCAACATGGTCTTCTCGCCAGAAGGCGACGGTGGCCTGATGCTGGGTTCCGCAGCTCCATCCACCCACTCTGATTACACTGAGACACTCATCGGCTCTTCTTCCGACGAGGTTAGCCCTGATGTAATCAACGAGGACCTTGGTTCTCTGGATGACCTGCTTAACCAGGTTGTCCGTATGGACGCTGAGGCAGACGGCGAAGACGAGTAA
PROTEIN sequence
Length: 1477
VADFDSTEFDAIKISLASADDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPVRDWECACGKYKGIRFKGITCERCGVEVTTAKVRRDRMGHIELAAPVSHIWYFKSPTSFPLARLLDIKSKDLEKVLYFASYVITSVDAEAREADVDDLREELAADLEELDAERDDQIARLREQGQPQDDEFGDFEPLSEDEIRAGVADLEEEYEEEKTLRREAFEKFMQLETRELISDEGLFSELKRYYGIYFKGGMGAEAVRDLLSNIDLEKEAKELRAIIANEDAQKQKREKAIKRLEIVDAFLKGGNDPANMILDVVPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDLEAPSIIVNNEKRMLQESVDALFDNGRRGRPVTGRGGRPLKSLAEALKGKQGRFRQNLLGKRVDYSGRSVIVVDPHLKLHQCGLPSAMALELFKPFVMRRLVELRKVENIKGAKRAIDRGTPVVWDVLDEVIQDRLVLLNRAPTLHRLSIQAFEPVLIEGKAIHLHPLVCAPFNADFDGDQMSVHVPLSTQAQTEARILMLSSNNLRSPASGKVLTVPSQDMVFGVYYLTSEKTGEDAKTLTFASFEDALLAIEANRDLDLQAKVVVRVSSKDANVADSDRAIFRVMTGRGQYEDLDVTEGTKRFETTVGRIIFNRQCLPEDYPYINYKMVKSDIGVLVNDCCDRYPMADVEPILDNIKKTGFHYATLAGLTVSVWDAVIPPHKPQLLQEAQDRVDQINEYYEDGFLSERERHVEVVNAWTECTDLLGSEMLTGFAENNPIYMMADSGARGSKTQLRQLAGMRGLMADMSGETIDLPIKANFREGLEPLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQDVIVREEDCGTDEAVTYPLIKPGQTSVDTDLIGRCTLEDVCDPNTGEVLIPAGGYVESKQDLERLVEHGLAKVQLRALLTCKSKYGVCQKCYGWDLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGADDITQGLPTVARMFDVVGNVNEKILGREADLAPVSGVLHITPETTEYLLRIVDADDASRVIEEWRVPASVRFMPGIEDGVVVRAGDQITRGFVNFRMLRRLTDIESTMHTFVESVKDVYTSQGVELNDKHIEVIARQMLRRVQVTNPGDSSYLLGQYVDRYVFAETVQNIALAGGTPPEAEPAILGTLKVASSIDSWLSSASFIRTAGVLTSAAIEGDVDHLLDLKSNVIVGKQIPAGTGLSAYNDVELTYHGTKIDGPTSSLAKSLPDWAPAELKDIEEQLPKQLDWVNEDYNGGVYSKNGRTLSSEDAKLYLFDDLGVSQRWTNKFSEVGIETVGDLIGKTEEDLLRIDGIGAKAIEELRDGLEARNLLYILEPEEDEADSEDLSQLLNMVFSPEGDGGLMLGSAAPSTHSDYTETLIGSSSDEVSPDVINEDLGSLDDLLNQVVRMDAEADGEDE*