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L1_008_000M1_scaffold_10221

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_10221_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..175
DNA (174bp) protein (58aa)
Two-component response regulator n=1 Tax=human gut metagenome RepID=K1RS43_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CDD79542.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_10221_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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172..1200
DNA (1029bp) protein (343aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=5 Tax=root RepID=A7VXW1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD79541.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_008_000M1_scaffold_10221_3
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1223..1720
DNA (498bp) protein (166aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=A7VP65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY84357.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L1_008_000M1_scaffold_10221_4
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2213..2653
DNA (441bp) protein (147aa)
DNA-directed RNA polymerase specialized sigma subunit (EC:2.7.7.-)
Sigma-70, region 4 n=5 Tax=root RepID=A7VP63_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:ENY84358.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L1_008_000M1_scaffold_10221_5
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2637..2888
DNA (252bp) protein (84aa)
Uncharacterized protein n=5 Tax=root RepID=A7VP62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY84359.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L1_008_000M1_scaffold_10221_6
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3298..3501
DNA (204bp) protein (68aa)
DNA binding domain, excisionase family n=5 Tax=root RepID=A7VP61_9CLOT
Excisionase transposon {ECO:0000313|EMBL:EGX68163.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
xis; Excisionase, Xis
L1_008_000M1_scaffold_10221_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3582..3917
DNA (336bp) protein (112aa)
DNA integration/recombination/inversion protein n=7 Tax=root RepID=E4NZ22_BIFBP
DNA integration/recombination/inversion protein
DNA integration/recombination/inversion protein {ECO:0000313|EMBL:CDD79536.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_008_000M1_scaffold_10221_8
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3914..4732
DNA (819bp) protein (273aa)
DNA integration/recombination/inversion protein n=7 Tax=root RepID=E4NZ22_BIFBP
DNA integration/recombination/inversion protein
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDO62940.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Displaying 8 items

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