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L1_008_000M1_scaffold_3290

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3290_1
unknown

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3..422
DNA (420bp) protein (140aa)

This feature has no annotations

L1_008_000M1_scaffold_3290_2

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478..1095
DNA (618bp) protein (206aa)
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit {ECO:0000313|EMBL:EKC51148.1}; EC=2.4.2.- {ECO:0000313|EMBL:EKC51148.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
imidazole glycerol phosphate synthase subunit hisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit n=1 Tax=human gut metagenome RepID=K1S0K6_9ZZZZ
L1_008_000M1_scaffold_3290_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1105..1821
DNA (717bp) protein (239aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylidenea mino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR4_9FIRM
L1_008_000M1_scaffold_3290_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1835..2593
DNA (759bp) protein (253aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR5_9FIRM
L1_008_000M1_scaffold_3290_5

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2773..3429
DNA (657bp) protein (219aa)
phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19 3.6.1.31)
Phosphoribosyl-ATP diphosphatase (Fragment) n=2 Tax=human gut metagenome RepID=K1T029_9ZZZZ
Phosphoribosyl-ATP diphosphatase {ECO:0000313|EMBL:EKC61014.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_3290_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3429..4256
DNA (828bp) protein (276aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR7_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EFB77015.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_3290_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4761..5954
DNA (1194bp) protein (398aa)
DEAD/DEAH box helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI4_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:EFB75445.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Superfamily II DNA and RNA helicases
L1_008_000M1_scaffold_3290_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6280..7755)
DNA (1476bp) protein (492aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI5_9FIRM
Signal transduction histidine kinase
L1_008_000M1_scaffold_3290_9

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comp(7755..8444)
DNA (690bp) protein (230aa)
Two-component response regulator n=1 Tax=human gut metagenome RepID=K1UC21_9ZZZZ
Two-component response regulator {ECO:0000313|EMBL:EKC79728.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_3290_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8832..9962
DNA (1131bp) protein (377aa)
Ribosome-binding ATPase YchF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI7_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
GTP-binding protein YchF
L1_008_000M1_scaffold_3290_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9980..10663
DNA (684bp) protein (228aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00131176}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00064821};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00064819}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00131282}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI8_9FIRM
L1_008_000M1_scaffold_3290_12
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10721..11863
DNA (1143bp) protein (381aa)
Cell envelope-related function transcriptional attenuator common domain n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IBD3_9FIRM
Cell envelope-related function transcriptional attenuator common domain {ECO:0000313|EMBL:CCY34282.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_008_000M1_scaffold_3290_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11929..12999)
DNA (1071bp) protein (357aa)
Sodium/calcium exchanger protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNY4_9FIRM
Sodium/calcium exchanger protein {ECO:0000313|EMBL:EFB75480.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CaCA family Na+/Ca+ antiporter
L1_008_000M1_scaffold_3290_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13475..14914)
DNA (1440bp) protein (480aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNY3_9FIRM
L1_008_000M1_scaffold_3290_15

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comp(14962..15201)
DNA (240bp) protein (80aa)
Acyl carrier protein n=1 Tax=human gut metagenome RepID=K1S2Y9_9ZZZZ
Acyl carrier protein {ECO:0000313|EMBL:EKC49759.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
acyl carrier protein
L1_008_000M1_scaffold_3290_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15775..16629
DNA (855bp) protein (285aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNY1_9FIRM
L1_008_000M1_scaffold_3290_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16890..18080
DNA (1191bp) protein (397aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNX9_9FIRM
L1_008_000M1_scaffold_3290_18

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18141..18551
DNA (411bp) protein (137aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:EKC62170.1}; EC=1.4.-.- {ECO:0000313|EMBL:EKC62170.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=human gut metagenome RepID=K1T738_9ZZZZ
hypothetical protein
L1_008_000M1_scaffold_3290_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18634..19209)
DNA (576bp) protein (192aa)
Nitroreductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP3_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EFB76991.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Nitroreductase
L1_008_000M1_scaffold_3290_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19538..20227)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67497.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Putative peptidoglycan-binding domain-containing protein
L1_008_000M1_scaffold_3290_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20248..22800)
DNA (2553bp) protein (851aa)
Putative peptidoglycan-binding domain-containing protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KBM3_9FIRM
Putative peptidoglycan-binding domain-containing protein
Putative peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:CBL02236.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_008_000M1_scaffold_3290_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22994..24388)
DNA (1395bp) protein (465aa)
Amino acid carrier protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K383_9FIRM
amino acid carrier protein
Amino acid carrier protein {ECO:0000313|EMBL:CBK97976.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_008_000M1_scaffold_3290_23
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24683..25975)
DNA (1293bp) protein (431aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=2 Tax=Coprococcus RepID=C0B9Q6_9FIRM
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:CDB85512.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
L1_008_000M1_scaffold_3290_24
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(26426..27736)
DNA (1311bp) protein (437aa)
membrane protein n=1 Tax=Blautia producta RepID=UPI0003656295
Uncharacterized protein {ECO:0000313|EMBL:CDC91989.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
dctM; putative TRAP C4-dicarboxylate transport system permease
L1_008_000M1_scaffold_3290_25

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comp(27750..28256)
DNA (507bp) protein (169aa)
C4-dicarboxylate transport system permease small protein n=1 Tax=human gut metagenome RepID=K1S5F9_9ZZZZ
C4-dicarboxylate transport system permease small protein {ECO:0000313|EMBL:EKC52698.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
dctQ; putative TRAP C4-dicarboxylate transport system DctQ subunit
L1_008_000M1_scaffold_3290_26

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comp(28253..29281)
DNA (1029bp) protein (343aa)
Dicarboxylate-binding periplasmic protein n=2 Tax=human gut metagenome RepID=K1RW36_9ZZZZ
Dicarboxylate-binding periplasmic protein {ECO:0000313|EMBL:EKC52697.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
dctP; putative TRAP C4-dicarboxylate transport system DctP subunit
L1_008_000M1_scaffold_3290_27
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29651..30082)
DNA (432bp) protein (144aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q418_9FIRM
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:CDC30480.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
transcriptional regulator, BadM/Rrf2 family
L1_008_000M1_scaffold_3290_28
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30441..31373
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QHV0_9FIRM
L1_008_000M1_scaffold_3290_29

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31479..32036
DNA (558bp) protein (186aa)
Metal dependent phosphohydrolase (Fragment) n=1 Tax=human gut metagenome RepID=K1S332_9ZZZZ
Metal dependent phosphohydrolase {ECO:0000313|EMBL:EKC48055.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
putative hydrolase
L1_008_000M1_scaffold_3290_30
Clostridium sp. SY8519, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32037..33119
DNA (1083bp) protein (361aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1042156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain SY8519).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V425_CLOSS
hypothetical protein
Displaying items 1-30 of 35 in total

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