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L1_008_000M1_scaffold_1087

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1087_1
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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356..736
-----------------
DNA (381bp)
protein (127aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIC0_9FIRM
Tax=RBG_13_Nitrospirae_39_12_curated
L1_008_000M1_scaffold_1087_2
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1124..2662
-----------------
DNA (1539bp)
protein (513aa)
Orn/Lys/Arg decarboxylase, major domain protein n=2 Tax=Eubacterium RepID=C0ET72_9FIRM
Orn/Lys/Arg decarboxylase major domain protein {ECO:0000313|EMBL:CDB18730.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Arginine/lysine/ornithine decarboxylases
L1_008_000M1_scaffold_1087_3
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2800..3429
-----------------
DNA (630bp)
protein (210aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET71_9FIRM
L1_008_000M1_scaffold_1087_4
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3528..4550
-----------------
DNA (1023bp)
protein (341aa)
Putative DNA polymerase III, delta' subunit n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET70_9FIRM
Putative DNA polymerase III, delta' subunit {ECO:0000313|EMBL:EEG37571.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
hypothetical protein
L1_008_000M1_scaffold_1087_5
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4569..5468
-----------------
DNA (900bp)
protein (300aa)
PSP1 C-terminal domain protein n=2 Tax=Eubacterium RepID=C0ET69_9FIRM
PSP1 C-terminal domain protein {ECO:0000313|EMBL:CDB18727.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Uncharacterized homolog of PSP1
L1_008_000M1_scaffold_1087_6
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5679..6428
-----------------
DNA (750bp)
protein (250aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GBR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB18726.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Predicted O-methyltransferase
L1_008_000M1_scaffold_1087_7
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6430..7272
-----------------
DNA (843bp)
protein (281aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET67_9FIRM
tetrapyrrole (corrin/porphyrin) methylase
L1_008_000M1_scaffold_1087_8
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7480..8514
-----------------
DNA (1035bp)
protein (345aa)
Bacterial group 2 Ig-like protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G9Q8_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDB17996.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein predicted by Glimmer/Critica
L1_008_000M1_scaffold_1087_9
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8527..10824
-----------------
DNA (2298bp)
protein (766aa)
Bacterial group 2 Ig-like protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET65_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDB17997.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
L1_008_000M1_scaffold_1087_10
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11068..12192
-----------------
DNA (1125bp)
protein (375aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
alr1; alanine racemase Alr (EC:5.1.1.1)
Alanine racemase n=1 Tax=Eubacterium hallii CAG:12 RepID=R6FXT8_9FIRM
L1_008_000M1_scaffold_1087_11
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12373..13002
-----------------
DNA (630bp)
protein (210aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G901_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB17999.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
nucleoside recognition domain containing protein
L1_008_000M1_scaffold_1087_12
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12999..13526
-----------------
DNA (528bp)
protein (176aa)
Transporter gate domain protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G128_9FIRM
Transporter gate domain protein {ECO:0000313|EMBL:CDB18000.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Uncharacterized membrane protein
L1_008_000M1_scaffold_1087_13
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13628..14341
-----------------
DNA (714bp)
protein (238aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG37561.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
hypothetical protein
L1_008_000M1_scaffold_1087_14
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14498..14605)
-----------------
DNA (108bp)
protein (36aa)
Uncharacterized protein n=2 Tax=environmental samples RepID=R5G9S3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB18002.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
L1_008_000M1_scaffold_1087_15
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15025..15585)
-----------------
DNA (561bp)
protein (187aa)
Hydrolase, NUDIX family n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET59_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:EEG37560.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Isopentenyldiphosphate isomerase
L1_008_000M1_scaffold_1087_16
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15644..16468)
-----------------
DNA (825bp)
protein (275aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG37559.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
L1_008_000M1_scaffold_1087_17
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17258..18865
-----------------
DNA (1608bp)
protein (536aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET57_9FIRM
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EEG37558.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
peptidoglycan-binding exported protein
L1_008_000M1_scaffold_1087_18
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18878..19903)
-----------------
DNA (1026bp)
protein (342aa)
Transcriptional regulator, LacI family n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET56_9FIRM
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEG37557.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Transcriptional regulators
L1_008_000M1_scaffold_1087_19
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20220..21227
-----------------
DNA (1008bp)
protein (336aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET55_9FIRM
ABC transporter, substrate-binding protein, aliphatic sulfonates family {ECO:0000313|EMBL:EEG37556.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
ABC transporter, substrate-binding protein, aliphatic sulfonates family
L1_008_000M1_scaffold_1087_20
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21291..22034
-----------------
DNA (744bp)
protein (248aa)
ABC transporter, ATP-binding protein n=2 Tax=Eubacterium RepID=C0ET54_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDB19060.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
ABC transporter
L1_008_000M1_scaffold_1087_21
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22034..22813
-----------------
DNA (780bp)
protein (260aa)
ABC transporter, permease protein n=2 Tax=Eubacterium RepID=C0ET53_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEG37554.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
ssuC3; aliphatic sulfonates ABC transporter permease SsuC
L1_008_000M1_scaffold_1087_22
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23107..23865
-----------------
DNA (759bp)
protein (253aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GYF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB19062.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
AraC family transcriptional regulator
L1_008_000M1_scaffold_1087_23
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23862..25757
-----------------
DNA (1896bp)
protein (632aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G0S6_9FIRM
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:CDB19063.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
putative sensor with HAMP domain
L1_008_000M1_scaffold_1087_24
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25735..27219
-----------------
DNA (1485bp)
protein (495aa)
Extracellular solute-binding protein family 1 n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GBX3_9FIRM
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDB19064.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
extracellular solute-binding protein
L1_008_000M1_scaffold_1087_25
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27330..29648
-----------------
DNA (2319bp)
protein (773aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G436_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB19065.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
L1_008_000M1_scaffold_1087_26
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30130..32292
-----------------
DNA (2163bp)
protein (721aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
DNA topoisomerase III, bacteria and conjugative plasmid (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET52_9FIRM
L1_008_000M1_scaffold_1087_27
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32305..33918
-----------------
DNA (1614bp)
protein (538aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG37552.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
hypothetical protein
L1_008_000M1_scaffold_1087_28
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33997..35697
-----------------
DNA (1701bp)
protein (567aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=C0ET50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB17467.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
ABC transporter, ATPase
L1_008_000M1_scaffold_1087_29
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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35654..35833
-----------------
DNA (180bp)
protein (60aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G818_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB17466.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
L1_008_000M1_scaffold_1087_30
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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36071..37171
-----------------
DNA (1101bp)
protein (367aa)
Putative trigger factor n=2 Tax=Eubacterium RepID=C0ET48_9FIRM
Putative trigger factor {ECO:0000313|EMBL:CDB17465.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
trigger factor
Displaying items 1-30 of 38 in total

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