ggKbase home page

L1_008_000M1_scaffold_1172

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1172_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(73..636)
DNA (564bp) protein (188aa)
TraG/TraD family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP16_9CLOT
TraG/TraD family protein {ECO:0000313|EMBL:EEA82202.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_008_000M1_scaffold_1172_2
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(633..1148)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX75174.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1172_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1200..1397)
DNA (198bp) protein (66aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B6FP18_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEA82204.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_000M1_scaffold_1172_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1455..7436)
DNA (5982bp) protein (1994aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX75176.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Cna protein B-type domain.
L1_008_000M1_scaffold_1172_5
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7844..8266)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX75177.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Sigma-70, region 4.
L1_008_000M1_scaffold_1172_6
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8270..8905)
DNA (636bp) protein (212aa)
DNA-directed RNA polymerase specialized sigma subunit n=2 Tax=Clostridiales RepID=D4LWL5_9FIRM
DNA-directed RNA polymerase specialized sigma subunit
DNA-directed RNA polymerase specialized sigma subunit {ECO:0000313|EMBL:CBL22018.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L1_008_000M1_scaffold_1172_7
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9075..9224)
DNA (150bp) protein (50aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B6FP22_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL22017.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L1_008_000M1_scaffold_1172_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9196..9354)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82209.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_000M1_scaffold_1172_9
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9351..9707)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX75181.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_1172_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9817..10155)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP25_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82211.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_008_000M1_scaffold_1172_11
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10162..11337)
DNA (1176bp) protein (392aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX75183.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Replication initiator protein A (RepA) N-terminus.
L1_008_000M1_scaffold_1172_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11318..12223)
DNA (906bp) protein (302aa)
ParB-like partition protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9YAW5_9CLOT
ParB-like partition protein {ECO:0000313|EMBL:ENZ09068.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ParB-like partition proteins
L1_008_000M1_scaffold_1172_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12216..12992)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9YLB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ09069.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ATPases involved in chromosome partitioning
L1_008_000M1_scaffold_1172_14
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13008..13112)
DNA (105bp) protein (35aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP29_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDM85927.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L1_008_000M1_scaffold_1172_15
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13099..13566)
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=N9X187_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGX75187.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1172_16
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13853..15211)
DNA (1359bp) protein (453aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EEG35999.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEG35999.1};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXG1_9FIRM
L1_008_000M1_scaffold_1172_17
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15327..15833)
DNA (507bp) protein (169aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Phosphodiesterase family protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXG0_9FIRM
phosphoesterase, MJ0936 family
L1_008_000M1_scaffold_1172_18
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15811..16386)
DNA (576bp) protein (192aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXF9_9FIRM
L1_008_000M1_scaffold_1172_19
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16511..17680)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXF8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG35996.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
nucleic acid methylase
L1_008_000M1_scaffold_1172_20
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17895..18257)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GWR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB18487.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Rhodanese domain containing protein
L1_008_000M1_scaffold_1172_21
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18760..19992)
DNA (1233bp) protein (411aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EZJ0_9FIRM
L1_008_000M1_scaffold_1172_22
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20638..21405)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EZI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG35311.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
L1_008_000M1_scaffold_1172_23
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22099..24003)
DNA (1905bp) protein (635aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXM6_9FIRM
L1_008_000M1_scaffold_1172_24
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24309..25349)
DNA (1041bp) protein (347aa)
Branched-chain-amino-acid transaminase n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GVF2_9FIRM
Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:CDB18047.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
branched-chain amino acid aminotransferase
L1_008_000M1_scaffold_1172_25
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25667..27106)
DNA (1440bp) protein (480aa)
Bacterial group 2 Ig-like protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6FXY3_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDB18048.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Bacterial Ig-like domain (group 2).
L1_008_000M1_scaffold_1172_26
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27139..27783)
DNA (645bp) protein (215aa)
GDSL-like protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXM3_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EEG35990.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
hypothetical protein
L1_008_000M1_scaffold_1172_27
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27841..28710)
DNA (870bp) protein (290aa)
EDD domain protein DegV family n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G163_9FIRM
EDD domain protein DegV family {ECO:0000313|EMBL:CDB18050.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
EDD domain protein, DegV family
L1_008_000M1_scaffold_1172_28
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29060..30889)
DNA (1830bp) protein (610aa)
Diol dehydratase / glycerol dehydratase reactivase large subunit n=2 Tax=Eubacterium RepID=C0EXM1_9FIRM
Diol dehydratase / glycerol dehydratase reactivase large subunit {ECO:0000313|EMBL:EEG35988.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
glycerol dehydratase reactivation factor, large subunit
L1_008_000M1_scaffold_1172_29
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31197..32117
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GVF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB18052.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
L1_008_000M1_scaffold_1172_30
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32467..34401)
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG35986.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
putative membrane protein
Displaying items 1-30 of 38 in total

View Taxonomy