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L1_008_000M1_scaffold_1199

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1199_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..639)
DNA (639bp) protein (213aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Ruminococcus lactaris RepID=B5CSS8_9FIRM
DNA-directed RNA polymerase subunit alpha
L1_008_000M1_scaffold_1199_2
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(966..1559)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=2 Tax=Clostridiales RepID=D4M344_9FIRM
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_008_000M1_scaffold_1199_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1656..2051)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M345_9FIRM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2086..2454)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=2 Tax=Ruminococcus lactaris RepID=B5CSS5_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
30S ribosomal protein S13
L1_008_000M1_scaffold_1199_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2866..2979)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NYN3_9FIRM
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
50S ribosomal protein L36
L1_008_000M1_scaffold_1199_6
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

comp(3212..3430)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=5 Tax=Firmicutes RepID=D4M347_9FIRM
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
L1_008_000M1_scaffold_1199_7
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3462..4106)
DNA (645bp) protein (215aa)
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Adenylate kinase n=2 Tax=Clostridiales RepID=D4M348_9FIRM
L1_008_000M1_scaffold_1199_8
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4213..5238)
DNA (1026bp) protein (342aa)
Protein translocase subunit SecY n=2 Tax=Clostridiales RepID=D4M349_9FIRM
protein translocase subunit secY/sec61 alpha
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_008_000M1_scaffold_1199_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5181..5441)
DNA (261bp) protein (87aa)
Protein translocase subunit SecY n=2 Tax=Clostridiales RepID=D4M349_9FIRM
Preprotein translocase subunit SecY suspected. See adjacent gene [L1_008_000M1_scaffold_1199_8].
protein translocase subunit secY/sec61 alpha
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_10
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5441..5881)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=2 Tax=Clostridiales RepID=D4M350_9FIRM
LSU ribosomal protein L15P
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_008_000M1_scaffold_1199_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5903..6085)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=2 Tax=Clostridiales RepID=D4M351_9FIRM
LSU ribosomal protein L30P
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_12
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6129..6638)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=2 Tax=Clostridiales RepID=D4M352_9FIRM
SSU ribosomal protein S5P
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_008_000M1_scaffold_1199_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6655..7023)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=2 Tax=Clostridiales RepID=D4M353_9FIRM
LSU ribosomal protein L18P
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_008_000M1_scaffold_1199_14
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7041..7583)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=2 Tax=Clostridiales RepID=D4M354_9FIRM
LSU ribosomal protein L6P
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_008_000M1_scaffold_1199_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7809..8210)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M355_9FIRM
Ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8259..8444)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=4 Tax=Clostridiales RepID=D4M356_9FIRM
Ribosomal protein S14
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_008_000M1_scaffold_1199_17
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8460..8999)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PYP9_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
rplE; 50S ribosomal protein L5
L1_008_000M1_scaffold_1199_18
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9023..9334)
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=2 Tax=Clostridiales RepID=D4M357_9FIRM
LSU ribosomal protein L24P
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_008_000M1_scaffold_1199_19
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9349..9717)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M358_9FIRM
LSU ribosomal protein L14P
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9741..9998)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=2 Tax=Ruminococcus lactaris RepID=B5CSR0_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
30S ribosomal protein S17
L1_008_000M1_scaffold_1199_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10016..10219)
DNA (204bp) protein (68aa)
50S ribosomal protein L29 n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C6F1_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
50S ribosomal protein L29
L1_008_000M1_scaffold_1199_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10209..10646)
DNA (438bp) protein (146aa)
50S ribosomal protein L16 n=3 Tax=Clostridiales RepID=D4M359_9FIRM
LSU ribosomal protein L16P
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10646..11302)
DNA (657bp) protein (219aa)
30S ribosomal protein S3 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M360_9FIRM
SSU ribosomal protein S3P
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11312..11698)
DNA (387bp) protein (129aa)
50S ribosomal protein L22 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M361_9FIRM
LSU ribosomal protein L22P
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11730..12011)
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M362_9FIRM
SSU ribosomal protein S19P
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_26
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12038..12880)
DNA (843bp) protein (281aa)
50S ribosomal protein L2 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M363_9FIRM
LSU ribosomal protein L2P
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12949..13248)
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=3 Tax=Clostridiales RepID=D4M364_9FIRM
Ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_008_000M1_scaffold_1199_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13248..13868)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M365_9FIRM
LSU ribosomal protein L4P
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13899..14582)
DNA (684bp) protein (228aa)
50S ribosomal protein L3 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M366_9FIRM
LSU ribosomal protein L3P
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_008_000M1_scaffold_1199_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14669..14986)
DNA (318bp) protein (106aa)
30S ribosomal protein S10 n=3 Tax=Clostridiales RepID=D4M367_9FIRM
SSU ribosomal protein S10P
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Displaying items 1-30 of 47 in total

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