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L1_008_000M1_scaffold_1236

Search features with annotation key words

Displaying items 31-60 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1236_31
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(37391..37837)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96901.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1236_32
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37847..38668)
DNA (822bp) protein (274aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYQ9_9FIRM
L1_008_000M1_scaffold_1236_33
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38728..38973)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4N0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96899.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1236_34
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39080..40765)
DNA (1686bp) protein (562aa)
Spore germination protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MZK4_9FIRM
Spore germination protein {ECO:0000313|EMBL:CCY96898.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Spore germination protein.
L1_008_000M1_scaffold_1236_35
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40762..42372)
DNA (1611bp) protein (537aa)
Bacillus/Clostridium GerA spore germination protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIF8_9FIRM
Bacillus/Clostridium GerA spore germination protein {ECO:0000313|EMBL:CCY96897.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Bacillus/Clostridium GerA spore germination protein.
L1_008_000M1_scaffold_1236_36
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42341..43042)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96896.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
transcriptional regulator, GntR family
L1_008_000M1_scaffold_1236_37
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43032..43913)
DNA (882bp) protein (294aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYQ4_9FIRM
L1_008_000M1_scaffold_1236_38
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44028..45575)
DNA (1548bp) protein (516aa)
Peptidoglycan-binding LysM n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4M5_9FIRM
Peptidoglycan-binding LysM {ECO:0000313|EMBL:CCY96894.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
LysM domain.
L1_008_000M1_scaffold_1236_39
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45624..46043)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MZJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96893.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1236_40
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46186..46926
DNA (741bp) protein (247aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferases n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIF3_9FIRM
L1_008_000M1_scaffold_1236_41
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(46981..49077)
DNA (2097bp) protein (699aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G0G4_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CDB18978.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
diguanylate cyclase (GGDEF) domain
L1_008_000M1_scaffold_1236_42
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49231..49980)
DNA (750bp) protein (250aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4X1_9FIRM
L1_008_000M1_scaffold_1236_43
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49989..52250)
DNA (2262bp) protein (754aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NPE8_9FIRM
Formate C-acetyltransferase {ECO:0000313|EMBL:CCY98822.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_44
unknown

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comp(52690..52845)
DNA (156bp) protein (52aa)

This feature has no annotations

L1_008_000M1_scaffold_1236_45
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53236..54702)
DNA (1467bp) protein (489aa)
Bacterial Ig-like domain (Group 2) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N3L4_9FIRM
Bacterial Ig-like domain (Group 2) {ECO:0000313|EMBL:CCY98373.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Bacterial Ig-like domain (group 2)./Bacterial Ig-like domain (group 3).
L1_008_000M1_scaffold_1236_46
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54648..54911)
DNA (264bp) protein (88aa)
Bacterial Ig-like domain (Group 2) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N3L4_9FIRM
Bacterial Ig-like domain (Group 2) {ECO:0000313|EMBL:CCY98373.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_47
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55105..56100)
DNA (996bp) protein (332aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NMZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98372.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_48
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(56436..56999)
DNA (564bp) protein (188aa)
50S ribosomal protein L1 n=3 Tax=Clostridiales RepID=D4LI02_9FIRM
ribosomal protein L1, bacterial/chloroplast
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
L1_008_000M1_scaffold_1236_49
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(57095..57520)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=4 Tax=Clostridiales RepID=D4LI01_9FIRM
LSU ribosomal protein L11P
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_50
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(57589..58110)
DNA (522bp) protein (174aa)
Transcription termination/antitermination protein NusG n=4 Tax=Clostridiales RepID=D4LI00_9FIRM
transcription antitermination protein nusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L1_008_000M1_scaffold_1236_51
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58126..58332)
DNA (207bp) protein (69aa)
Protein translocase subunit secE/sec61 gamma n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N3L0_9FIRM
Protein translocase subunit secE/sec61 gamma {ECO:0000313|EMBL:CCY98368.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
protein translocase subunit secE/sec61 gamma
L1_008_000M1_scaffold_1236_52
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58834..59571)
DNA (738bp) protein (246aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NMY9_9FIRM
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CCY98367.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_53
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(59573..61390)
DNA (1818bp) protein (606aa)
Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] (EC:2.2.1.6)
Thiamine pyrophosphate-requiring enzymes [acetolactate synthase pyruvate dehydrogenase (Cytochrome) glyoxylate carboligase phosphonopyruvate decarboxylase] n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NLZ8_9FIRM
Thiamine pyrophosphate-requiring enzymes [acetolactate synthase pyruvate dehydrogenase (Cytochrome) glyoxylate carboligase phosphonopyruvate decarboxylase] {ECO:0000313|EMBL:CCY98366.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_54
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61383..62537)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N2Z1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98365.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_55
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62579..64858)
DNA (2280bp) protein (760aa)
LPS biosynthesis protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N909_9FIRM
LPS biosynthesis protein {ECO:0000313|EMBL:CCY98364.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
LPS biosynthesis protein
L1_008_000M1_scaffold_1236_56
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(64862..66163)
DNA (1302bp) protein (434aa)
Cytidyltransferase-related domain n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N3K4_9FIRM
Cytidyltransferase-related domain {ECO:0000313|EMBL:CCY98363.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
cytidyltransferase-related domain
L1_008_000M1_scaffold_1236_57
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(66163..67437)
DNA (1275bp) protein (425aa)
Fucose 4-O-acetylase and related acetyltransferases n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NMY3_9FIRM
Fucose 4-O-acetylase and related acetyltransferases {ECO:0000313|EMBL:CCY98362.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Fucose 4-O-acetylase and related acetyltransferases
L1_008_000M1_scaffold_1236_58
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67641..68384)
DNA (744bp) protein (248aa)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NLZ3_9FIRM
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CCY98361.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Glycosyltransferases involved in cell wall biogenesis
L1_008_000M1_scaffold_1236_59
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(68466..69839)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N2Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98360.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
L1_008_000M1_scaffold_1236_60
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(70052..71413)
DNA (1362bp) protein (454aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N903_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCY98359.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Displaying items 31-60 of 61 in total

View Taxonomy