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L1_008_000M1_scaffold_1236

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1236_1
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(84..203)
DNA (120bp) protein (40aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5NII5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97146.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_2
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(268..1536)
DNA (1269bp) protein (423aa)
alpha-L-fucosidase (EC:3.2.1.51)
Glycoside hydrolase family 29 (Alpha-L-fucosidase) n=2 Tax=Clostridiales RepID=R5MZG0_9FIRM
Glycoside hydrolase family 29 (Alpha-L-fucosidase) {ECO:0000313|EMBL:CCY97145.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1877..2941
DNA (1065bp) protein (355aa)
Transcriptional regulators n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5G2_9FIRM
Transcriptional regulators {ECO:0000313|EMBL:CCY97144.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Transcriptional regulators
L1_008_000M1_scaffold_1236_4
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2945..3961
DNA (1017bp) protein (339aa)
Transcriptional regulators (EC:5.1.1.1)
Transcriptional regulators {ECO:0000313|EMBL:CBL19512.1}; EC=5.1.1.1 {ECO:0000313|EMBL:CBL19512.1};; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
Transcriptional regulators n=2 Tax=Ruminococcus RepID=D4LI51_9FIRM
L1_008_000M1_scaffold_1236_5
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4147..4629)
DNA (483bp) protein (161aa)
Transglutaminase domain-containing protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJ74_9FIRM
Transglutaminase domain-containing protein {ECO:0000313|EMBL:CCY97142.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
transglutaminase domain-containing protein
L1_008_000M1_scaffold_1236_6
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4626..6440)
DNA (1815bp) protein (605aa)
Transglutaminase domain-containing protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJ74_9FIRM
Transglutaminase domain-containing protein {ECO:0000313|EMBL:CCY97142.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Transglutaminase-like enzymes, putative cysteine proteases
L1_008_000M1_scaffold_1236_7
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6507..7091)
DNA (585bp) protein (195aa)
Uncharacterized protein involved in copper resistance n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NII2_9FIRM
Uncharacterized protein involved in copper resistance {ECO:0000313|EMBL:CCY97141.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Uncharacterized protein involved in copper resistance
L1_008_000M1_scaffold_1236_8
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7155..7823)
DNA (669bp) protein (223aa)
Transcriptional regulators of sugar metabolism n=4 Tax=Clostridiales RepID=D4LI47_9FIRM
Transcriptional regulators of sugar metabolism
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ERI95767.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L1_008_000M1_scaffold_1236_9
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8253..9566)
DNA (1314bp) protein (438aa)
Predicted aminopeptidases n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GWM0_9FIRM
Predicted aminopeptidases {ECO:0000313|EMBL:CDE31784.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
Predicted aminopeptidases
L1_008_000M1_scaffold_1236_10
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9773..10462)
DNA (690bp) protein (230aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N0B4_9FIRM
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CCY97138.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L1_008_000M1_scaffold_1236_11
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10811..11170)
DNA (360bp) protein (120aa)
Uncharacterized protein (Fragment) n=1 Tax=Blautia sp. KLE 1732 RepID=U2EM39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI95772.1}; Flags: Fragment;; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L1_008_000M1_scaffold_1236_12
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11251..12108)
DNA (858bp) protein (286aa)
Uncharacterized conserved protein n=2 Tax=Clostridiales RepID=R5NHV9_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CCY96921.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1236_13
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12287..13129)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96920.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
HAD-superfamily hydrolase, subfamily IIB
L1_008_000M1_scaffold_1236_14
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13287..14966)
DNA (1680bp) protein (560aa)
Glycosidases (EC:3.2.1.10)
Glycosidases n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4Q4_9FIRM
Glycosidases {ECO:0000313|EMBL:CCY96919.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_15
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15055..15885)
DNA (831bp) protein (277aa)
PTS system IID component, Man family (TC 4.A.6) n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LI42_9FIRM
PTS system IID component, Man family (TC 4.A.6)
PTS system IID component, Man family (TC 4.A.6) {ECO:0000313|EMBL:CBL19503.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L1_008_000M1_scaffold_1236_16
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15882..16622)
DNA (741bp) protein (247aa)
Uncharacterized protein n=2 Tax=environmental samples RepID=R5NII0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96917.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L1_008_000M1_scaffold_1236_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16727..17749)
DNA (1023bp) protein (341aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHV3_9FIRM
Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB {ECO:0000313|EMBL:CCY96916.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_1236_18
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17993..19027)
DNA (1035bp) protein (345aa)
Transcriptional regulators n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYS7_9FIRM
Transcriptional regulators {ECO:0000313|EMBL:CCY96915.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Transcriptional regulators
L1_008_000M1_scaffold_1236_19
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19014..19952)
DNA (939bp) protein (313aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin reductase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4P9_9FIRM
L1_008_000M1_scaffold_1236_20
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20273..22045
DNA (1773bp) protein (591aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MZM1_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCY96913.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1236_21
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22075..22356)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96912.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_1236_22
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22362..22775)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96911.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
conserved hypothetical protein TIGR00051
L1_008_000M1_scaffold_1236_23
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23782..25407
DNA (1626bp) protein (542aa)
Bacterial capsule synthesis protein PGA_cap n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYS2_9FIRM
Bacterial capsule synthesis protein PGA_cap {ECO:0000313|EMBL:CCY96910.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Bacterial capsule synthesis protein PGA_cap.
L1_008_000M1_scaffold_1236_24
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25551..28151)
DNA (2601bp) protein (867aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8)
Putative calcium-translocating P-type ATPase PMCA-type n=3 Tax=Blautia RepID=R5C0B5_9FIRM
Putative calcium-translocating P-type ATPase PMCA-type {ECO:0000313|EMBL:CCX58337.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
L1_008_000M1_scaffold_1236_25
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28392..30278)
DNA (1887bp) protein (629aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIG8_9FIRM
L1_008_000M1_scaffold_1236_26
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30417..31922)
DNA (1506bp) protein (502aa)
Predicted xylanase/chitin deacetylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHU2_9FIRM
Predicted xylanase/chitin deacetylase {ECO:0000313|EMBL:CCY96906.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted xylanase/chitin deacetylase
L1_008_000M1_scaffold_1236_27
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32128..33456)
DNA (1329bp) protein (443aa)
Trigger factor n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYR6_9FIRM
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
trigger factor
L1_008_000M1_scaffold_1236_28
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33557..35083)
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4N7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96904.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Polysaccharide deacetylase.
L1_008_000M1_scaffold_1236_29
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35135..36646)
DNA (1512bp) protein (504aa)
Polysaccharide deacetylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MZL0_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:CCY96903.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Polysaccharide deacetylase.
L1_008_000M1_scaffold_1236_30
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36889..37329
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96902.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Protein of unknown function (DUF1628).
Displaying items 1-30 of 61 in total

View Taxonomy