ggKbase home page

L1_008_000M1_scaffold_1239

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1239_1
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

2..541
DNA (540bp) protein (180aa)
ABC transporter related protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MTJ5_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDB99219.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ABC transporter related protein
L1_008_000M1_scaffold_1239_2
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

538..1281
DNA (744bp) protein (248aa)
Putative membrane protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MYJ3_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDB99221.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ABC-2 family transporter protein
L1_008_000M1_scaffold_1239_3
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

1287..2432
DNA (1146bp) protein (382aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NNK4_9FIRM
two component system histidine kinase
L1_008_000M1_scaffold_1239_4
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

2443..3117
DNA (675bp) protein (225aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MTK1_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDB99224.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_1239_5
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

3132..4202
DNA (1071bp) protein (357aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKL4_9FIRM
L1_008_000M1_scaffold_1239_6
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(4412..5251)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NNK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99227.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1239_7
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

5404..5937
DNA (534bp) protein (178aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHW0_9FIRM
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CDB99228.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1239_8
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

5939..7615
DNA (1677bp) protein (559aa)
Radical SAM domain protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKL7_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:CDB99230.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
radical SAM domain-containing protein
L1_008_000M1_scaffold_1239_9
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

7594..8535
DNA (942bp) protein (314aa)
Auxin Efflux Carrier n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MYK3_9FIRM
Auxin Efflux Carrier {ECO:0000313|EMBL:CDB99231.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
auxin efflux carrier family protein
L1_008_000M1_scaffold_1239_10
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(8532..8948)
DNA (417bp) protein (139aa)
PF06541 domain protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHW6_9FIRM
PF06541 domain protein {ECO:0000313|EMBL:CDB99233.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1239_11
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(9008..9433)
DNA (426bp) protein (142aa)
Drug/metabolite transporter DMT family n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKM2_9FIRM
Drug/metabolite transporter DMT family {ECO:0000313|EMBL:CDB99235.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1239_12
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(9817..11742)
DNA (1926bp) protein (642aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHX1_9FIRM
L1_008_000M1_scaffold_1239_13
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(11786..12031)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99240.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1239_14
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(12031..13125)
DNA (1095bp) protein (365aa)
DNA replication and repair protein RecF n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NNM4_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
recF; recombination protein F
L1_008_000M1_scaffold_1239_15
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(13126..13356)
DNA (231bp) protein (77aa)
S4 domain protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHX5_9FIRM
S4 domain protein {ECO:0000313|EMBL:CDB99243.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
RNA-binding S4 domain-containing protein
L1_008_000M1_scaffold_1239_16
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(13381..15642)
DNA (2262bp) protein (754aa)
(P)ppGpp synthetase I SpoT/RelA n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MTM7_9FIRM
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:CDB99244.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
RelA/SpoT family (p)ppGpp synthetase
L1_008_000M1_scaffold_1239_17
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(15647..17359)
DNA (1713bp) protein (571aa)
exonuclease RecJ (EC:3.1.-.-)
Exonuclease RecJ n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MYL6_9FIRM
Exonuclease RecJ {ECO:0000313|EMBL:CDB99246.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1239_18
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

17506..17652
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NNM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99247.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ARF/SAR superfamily protein
L1_008_000M1_scaffold_1239_19
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(17698..18669)
DNA (972bp) protein (324aa)
Peptide chain release factor 2 n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHY1_9FIRM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
peptide chain release factor 2
L1_008_000M1_scaffold_1239_20
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(18844..19569)
DNA (726bp) protein (242aa)
Putative O-methyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MTN5_9FIRM
Putative O-methyltransferase {ECO:0000313|EMBL:CDB99249.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
putative O-methyltransferase
L1_008_000M1_scaffold_1239_21
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(19569..20030)
DNA (462bp) protein (154aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKP0_9FIRM
L1_008_000M1_scaffold_1239_22
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(20052..21077)
DNA (1026bp) protein (342aa)
Cell shape determining protein MreB/Mrl family n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MYM6_9FIRM
Cell shape determining protein MreB/Mrl family {ECO:0000313|EMBL:CDB99256.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
rod shape-determining protein Mbl
L1_008_000M1_scaffold_1239_23
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(21165..21974)
DNA (810bp) protein (270aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NNN7_9FIRM
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:CDB99257.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
putative TIM-barrel fold metal-dependent hydrolase
L1_008_000M1_scaffold_1239_24
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(22073..23362)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99258.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Na/H antiporter (napA)
L1_008_000M1_scaffold_1239_25
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

23819..25492
DNA (1674bp) protein (558aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MTP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99259.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1239_26
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

25504..26172
DNA (669bp) protein (223aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKP3_9FIRM
L1_008_000M1_scaffold_1239_27
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

26188..27003
DNA (816bp) protein (272aa)
dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:4.1.2.25)
Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MYN1_9FIRM
Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:CDB99261.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1239_28
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

27181..28314
DNA (1134bp) protein (378aa)
Ribose-phosphate pyrophosphokinase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NNP1_9FIRM
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CDB99262.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ribose-phosphate pyrophosphokinase
L1_008_000M1_scaffold_1239_29
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

28324..29076
DNA (753bp) protein (251aa)
Nucleotidyl transferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHZ3_9FIRM
Nucleotidyl transferase {ECO:0000313|EMBL:CDB99263.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
nucleotidyl transferase
L1_008_000M1_scaffold_1239_30
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

29262..29711
DNA (450bp) protein (150aa)
Transcriptional repressor CtsR n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MTQ3_9FIRM
Transcriptional repressor CtsR {ECO:0000313|EMBL:CDB99264.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Transcriptional repressor of class III stress genes
Displaying items 1-30 of 49 in total

View Taxonomy