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L1_008_000M1_scaffold_1256

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1256_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(104..1306)
DNA (1203bp) protein (401aa)
aspartate kinase, monofunctional class (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Aspartokinase n=4 Tax=Clostridiales RepID=D4MYN6_9FIRM
L1_008_000M1_scaffold_1256_2
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1332..2531)
DNA (1200bp) protein (400aa)
phosphoglycerate mutase (EC:5.4.2.1)
Phosphoglycerate mutase n=4 Tax=Clostridiales RepID=D4MYN5_9FIRM
Putative homoserine kinase {ECO:0000313|EMBL:EKY24191.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_008_000M1_scaffold_1256_3
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2569..3009)
DNA (441bp) protein (147aa)
ACT domain-containing protein (EC:5.4.99.5)
UPF0735 ACT domain-containing protein CL2_06880 n=4 Tax=Clostridiales RepID=D4MYN4_9FIRM
UPF0735 ACT domain-containing protein BN562_01973 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_008_000M1_scaffold_1256_4
unknown

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comp(3138..4259)
DNA (1122bp) protein (374aa)
Peptide chain release factor 2 n=5 Tax=Clostridiales RepID=D4MYN3_9FIRM
bacterial peptide chain release factor 2 (bRF-2)
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_008_000M1_scaffold_1256_5
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4274..6844)
DNA (2571bp) protein (857aa)
Protein translocase subunit SecA n=2 Tax=Lachnospiraceae RepID=L1Q893_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
protein translocase subunit secA
L1_008_000M1_scaffold_1256_6
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7082..7612)
DNA (531bp) protein (177aa)
Ribosomal subunit interface protein n=5 Tax=Clostridiales RepID=D4MYN1_9FIRM
ribosomal subunit interface protein
Ribosomal subunit interface protein {ECO:0000313|EMBL:EKY24195.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_008_000M1_scaffold_1256_7
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7978..8898)
DNA (921bp) protein (307aa)
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Thioredoxin reductase n=5 Tax=Clostridiales RepID=D4MYN0_9FIRM
L1_008_000M1_scaffold_1256_8
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8931..10736)
DNA (1806bp) protein (602aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1 4-alpha-glucan branching enzyme n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZEN0_9FIRM
L1_008_000M1_scaffold_1256_9
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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10904..11479
DNA (576bp) protein (192aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=L1Q8A3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKY24198.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
hypothetical protein
L1_008_000M1_scaffold_1256_10
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11569..12216)
DNA (648bp) protein (216aa)
Chloramphenicol O-acetyltransferase (EC:2.3.1.28)
Chloramphenicol acetyltransferase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VH28_9FIRM
Chloramphenicol acetyltransferase {ECO:0000313|EMBL:EFV17863.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L1_008_000M1_scaffold_1256_11
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12246..13118)
DNA (873bp) protein (291aa)
Pyridoxal/pyridoxine/pyridoxamine kinase (EC:2.7.1.35)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Pyridoxal/pyridoxine/pyridoxamine kinase n=5 Tax=Clostridiales RepID=D4MYK8_9FIRM
L1_008_000M1_scaffold_1256_12
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13152..14078)
DNA (927bp) protein (309aa)
Fe-S oxidoreductases n=4 Tax=Clostridiales RepID=D4MYK7_9FIRM
Fe-S oxidoreductases
Radical SAM domain protein {ECO:0000313|EMBL:EDS21061.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_008_000M1_scaffold_1256_13
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14256..15221
DNA (966bp) protein (322aa)
D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VH31_9FIRM
D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:EFV17866.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Phosphoglycerate dehydrogenase and related dehydrogenases
L1_008_000M1_scaffold_1256_14
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15339..16646)
DNA (1308bp) protein (436aa)
Uncharacterized flavoproteins n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z612_9FIRM
Uncharacterized flavoproteins {ECO:0000313|EMBL:CDA32069.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Uncharacterized flavoproteins
L1_008_000M1_scaffold_1256_15
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16843..18288)
DNA (1446bp) protein (482aa)
Iron only hydrogenase large subunit, C-terminal domain (EC:1.12.7.2)
Iron only hydrogenase large subunit, C-terminal domain n=2 Tax=Clostridiales RepID=D4MYK4_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDS21064.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_008_000M1_scaffold_1256_16
unknown

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18650..19756
DNA (1107bp) protein (369aa)
Methionine synthase II (cobalamin-independent) (EC:2.1.1.14)
Methionine synthase II (Cobalamin-independent) {ECO:0000313|EMBL:CBL37698.1}; EC=2.1.1.14 {ECO:0000313|EMBL:CBL37698.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Methionine synthase II (Cobalamin-independent) n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4MYK3_9FIRM
L1_008_000M1_scaffold_1256_17
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20090..21502)
DNA (1413bp) protein (471aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VH54_9FIRM
L1_008_000M1_scaffold_1256_18
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21615..22310)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VH55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV17758.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1256_19
unknown

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comp(22328..22456)
DNA (129bp) protein (43aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P2W2_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL37691.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_008_000M1_scaffold_1256_20
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22579..22971)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5YZ10_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
rpsI; 30S ribosomal protein S9
L1_008_000M1_scaffold_1256_21
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22993..23427)
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=4 Tax=Clostridiales RepID=D4MYJ5_9FIRM
LSU ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_008_000M1_scaffold_1256_22
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23969..24505)
DNA (537bp) protein (179aa)
Transporter, auxin efflux carrier family protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q502_9FIRM
Transporter, auxin efflux carrier family protein {ECO:0000313|EMBL:EKY22687.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Predicted permeases
L1_008_000M1_scaffold_1256_23
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24495..25253)
DNA (759bp) protein (253aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=2 Tax=Lachnospiraceae RepID=E5VH59_9FIRM
L1_008_000M1_scaffold_1256_24
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25260..26069)
DNA (810bp) protein (270aa)
ABC-type cobalt transport system, permease component CbiQ and related transporters n=4 Tax=Clostridiales RepID=D4MYJ2_9FIRM
ABC-type cobalt transport system, permease component CbiQ and related transporters
Cobalt transport protein {ECO:0000313|EMBL:EKY22685.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_008_000M1_scaffold_1256_25
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26071..26931)
DNA (861bp) protein (287aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
ABC transporter n=2 Tax=Lachnospiraceae RepID=E5VH61_9FIRM
ABC-type cobalt transport system, ATPase component
L1_008_000M1_scaffold_1256_26
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26916..27767)
DNA (852bp) protein (284aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
ABC-type cobalt transport system ATPase component n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZDD8_9FIRM
ABC-type cobalt transport system, ATPase component
L1_008_000M1_scaffold_1256_27
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27913..28449)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=4 Tax=Clostridiales RepID=D4MYI9_9FIRM
LSU ribosomal protein L17P
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_008_000M1_scaffold_1256_28
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28515..29471)
DNA (957bp) protein (319aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
DNA-directed RNA polymerase subunit alpha n=5 Tax=Clostridiales RepID=D4MYI8_9FIRM
L1_008_000M1_scaffold_1256_29
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29511..30104)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=5 Tax=Clostridiales RepID=D4MYI7_9FIRM
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L1_008_000M1_scaffold_1256_30
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30124..30516)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=5 Tax=Clostridiales RepID=D4MYI6_9FIRM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Displaying items 1-30 of 60 in total

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