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L1_008_000M1_scaffold_1299

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1299_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..239
DNA (237bp) protein (79aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Ribosomal large subunit pseudouridine synthase D n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AUG9_9FIRM
L1_008_000M1_scaffold_1299_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

394..1023
DNA (630bp) protein (210aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GEB5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55502.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_1299_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1359..2273)
DNA (915bp) protein (305aa)
Phage related protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B921_9FIRM
Phage related protein {ECO:0000313|EMBL:CDA55501.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Leucine-rich repeat (LRR) protein
L1_008_000M1_scaffold_1299_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2270..2497)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GEB7_9FIRM
Putative dihydrofolate reductase type 8 {ECO:0000313|EMBL:CDA55500.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_1299_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2494..2949)
DNA (456bp) protein (152aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GEB8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55499.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_1299_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3215..3355)
DNA (141bp) protein (47aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR02_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09304.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_1299_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3352..3804)
DNA (453bp) protein (151aa)
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR03_9FIRM
L1_008_000M1_scaffold_1299_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3755..3862)
DNA (108bp) protein (36aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BQI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA55497.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_1299_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4028..4762
DNA (735bp) protein (245aa)
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B907_9FIRM
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control {ECO:0000313|EMBL:CDA55496.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L1_008_000M1_scaffold_1299_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4796..5815
DNA (1020bp) protein (340aa)
Site-specific recombinase XerD n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXG5_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CDA55495.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_1299_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5922..6647)
DNA (726bp) protein (242aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
Acyltransferase n=2 Tax=Roseburia RepID=C7GEC2_9FIRM
Acyltransferase {ECO:0000313|EMBL:EEU99848.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_1299_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6835..7167)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KR05_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09307.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_1299_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7384..8001
DNA (618bp) protein (206aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
LexA repressor n=4 Tax=Roseburia RepID=D4KR06_9FIRM
L1_008_000M1_scaffold_1299_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8089..8436)
DNA (348bp) protein (116aa)
Ribosomal silencing factor RsfS n=2 Tax=Roseburia RepID=C7G7T6_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
iojap-related protein
L1_008_000M1_scaffold_1299_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8524..9102)
DNA (579bp) protein (193aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6AWV8_9FIRM
conserved hypothetical protein TIGR00488
Uncharacterized protein {ECO:0000313|EMBL:CDA55490.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_1299_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9184..9828)
DNA (645bp) protein (215aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244, ECO:0000313|EMBL:CBL12049.1};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXF9_9FIRM
L1_008_000M1_scaffold_1299_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9830..10162)
DNA (333bp) protein (111aa)
RNA-binding protein, YhbY family n=4 Tax=Roseburia RepID=C7G7T3_9FIRM
conserved hypothetical protein TIGR00253
Uncharacterized protein {ECO:0000313|EMBL:CBL09311.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_1299_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10184..11068)
DNA (885bp) protein (295aa)
GTPase Obg n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR10_9FIRM
Obg family GTPase CgtA
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454, ECO:0000256|SAAS:SAAS00043060}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_1299_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11014..11334)
DNA (321bp) protein (107aa)
GTPase Obg n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXF7_9FIRM
Obg family GTPase CgtA
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454, ECO:0000256|SAAS:SAAS00043060}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_1299_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11510..11794)
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=4 Tax=Roseburia RepID=D4KR11_9FIRM
LSU ribosomal protein L27P
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_1299_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11798..12127)
DNA (330bp) protein (110aa)
Predicted ribosomal protein n=2 Tax=Roseburia intestinalis RepID=D4KR12_9FIRM
Predicted ribosomal protein
Uncharacterized protein {ECO:0000313|EMBL:EEV02137.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_1299_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12146..12451)
DNA (306bp) protein (102aa)
50S ribosomal protein L21 n=4 Tax=Roseburia RepID=D4KR13_9FIRM
LSU ribosomal protein L21P
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_1299_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12566..13399)
DNA (834bp) protein (278aa)
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Undecaprenyl-diphosphatase n=2 Tax=Roseburia RepID=D4KR14_9FIRM
L1_008_000M1_scaffold_1299_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13467..14723)
DNA (1257bp) protein (419aa)
Ribonucleases G and E (EC:3.1.26.-)
Ribonucleases G and E {ECO:0000313|EMBL:CBL09317.1}; EC=3.1.26.- {ECO:0000313|EMBL:CBL09317.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Ribonucleases G and E n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR15_9FIRM
L1_008_000M1_scaffold_1299_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14725..15450)
DNA (726bp) protein (242aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Roseburia intestinalis RepID=D4KR16_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL12041.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_1299_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15521..17383)
DNA (1863bp) protein (621aa)
Radical SAM domain protein n=2 Tax=Roseburia intestinalis RepID=C7G7S5_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:EEV02132.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Fe-S oxidoreductase
L1_008_000M1_scaffold_1299_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17466..17765)
DNA (300bp) protein (100aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G7S4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55476.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_1299_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17962..19035)
DNA (1074bp) protein (358aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AWT9_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA55475.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000M1_scaffold_1299_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19082..20398)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B370_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA55474.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000M1_scaffold_1299_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20491..21774)
DNA (1284bp) protein (428aa)
phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31 3.5.4.19 4.1.3.-)
Phosphoribosyl-ATP pyrophosphohydrolase n=2 Tax=Roseburia RepID=D4KR21_9FIRM
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Displaying items 1-30 of 61 in total

View Taxonomy