ggKbase home page

L1_008_000M1_scaffold_1305

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1305_1
unknown

Not on your lists

223..405
DNA (183bp) protein (61aa)

This feature has no annotations

L1_008_000M1_scaffold_1305_2
unknown

Not on your lists

426..548
DNA (123bp) protein (41aa)

This feature has no annotations

L1_008_000M1_scaffold_1305_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

545..739
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9YR20_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ10197.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L1_008_000M1_scaffold_1305_4
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

736..930
DNA (195bp) protein (65aa)
Conserved protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NMX0_9FIRM
Conserved protein {ECO:0000313|EMBL:CDF13442.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
hypothetical protein
L1_008_000M1_scaffold_1305_5
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

1098..1649
DNA (552bp) protein (184aa)
bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGZ3_9FIRM
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1305_6
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

1652..2572
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NBI6_9FIRM
L1_008_000M1_scaffold_1305_7
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

2588..3877
DNA (1290bp) protein (430aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=2 Tax=root RepID=R6M9P5_9FIRM
L1_008_000M1_scaffold_1305_8
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

3888..4802
DNA (915bp) protein (305aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6L0_9FIRM
L1_008_000M1_scaffold_1305_9
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

4813..5577
DNA (765bp) protein (255aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M9P0_9FIRM
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain
L1_008_000M1_scaffold_1305_10
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

5570..6481
DNA (912bp) protein (304aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.3.1)
Dihydroorotate dehydrogenase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NBH4_9FIRM
L1_008_000M1_scaffold_1305_11
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

6724..7296
DNA (573bp) protein (191aa)
Multimeric flavodoxin WrbA n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M9N5_9FIRM
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:CDB95275.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
multimeric flavodoxin WrbA
L1_008_000M1_scaffold_1305_12
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

7318..9156
DNA (1839bp) protein (613aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
DNA primase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MLW1_9FIRM
DNA primase, catalytic core
L1_008_000M1_scaffold_1305_13
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

9161..10318
DNA (1158bp) protein (386aa)
RNA polymerase sigma factor SigA n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6J7_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1305_14
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

10386..11351
DNA (966bp) protein (322aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Ribosomal protein L11 methyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NBG2_9FIRM
50S ribosomal protein L11 methyltransferase
L1_008_000M1_scaffold_1305_15
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

11379..12557
DNA (1179bp) protein (393aa)
fprA2; Flavo-diiron protein FprA2 (EC:1.6.3.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M9M5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB95265.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1305_16
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12624..12959)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. CAG:782 RepID=R5JIA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY54308.1}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
L1_008_000M1_scaffold_1305_17
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

13137..14267
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NBF8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB95262.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L1_008_000M1_scaffold_1305_18
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

14458..15807
DNA (1350bp) protein (450aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M9M1_9FIRM
L1_008_000M1_scaffold_1305_19
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

15865..16278
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MLU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB95256.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1305_20
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

16364..17866
DNA (1503bp) protein (501aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGW3_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDB95254.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1305_21
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

17937..19226
DNA (1290bp) protein (430aa)
Galactokinase (EC:2.7.1.6)
GHMP kinase N-terminal domain protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M9L0_9FIRM
GHMP kinase N-terminal domain protein {ECO:0000313|EMBL:CDB95250.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1305_22
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(19280..19729)
DNA (450bp) protein (150aa)
Stage V sporulation protein AC n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MLT6_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CDB95246.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
stage V sporulation protein AC
L1_008_000M1_scaffold_1305_23
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

19907..20770
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6H5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB95243.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1305_24
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

20757..21350
DNA (594bp) protein (198aa)
DnaJ domain protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGV4_9FIRM
DnaJ domain protein {ECO:0000313|EMBL:CDB95239.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L1_008_000M1_scaffold_1305_25
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

21378..22355
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NBD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB95237.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1305_26
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

22349..23176
DNA (828bp) protein (276aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Release factor glutamine methyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGV0_9FIRM
HemK family methyltransferase
L1_008_000M1_scaffold_1305_27
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

23189..24265
DNA (1077bp) protein (359aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MLS1_9FIRM
6-phosphofructokinase 2 {ECO:0000313|EMBL:CDB95231.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_1305_28
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(24351..25040)
DNA (690bp) protein (230aa)
RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGU7_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
RNA polymerase sigma-27/28 subunit,RpsK/SigK
L1_008_000M1_scaffold_1305_29
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

25260..26573
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NBC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB95227.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
YARHG domain protein
L1_008_000M1_scaffold_1305_30
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(26619..27536)
DNA (918bp) protein (306aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGU4_9FIRM
Displaying items 1-30 of 62 in total

View Taxonomy