ggKbase home page

L1_008_000M1_scaffold_1343

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1343_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..135
DNA (135bp) protein (45aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN52_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EDS00975.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_008_000M1_scaffold_1343_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

132..848
DNA (717bp) protein (239aa)
LytTr DNA-binding domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN51_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EDS00974.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
LytTR family two component transcriptional regulator
L1_008_000M1_scaffold_1343_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(996..1268)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHV1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33334.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_1343_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1384..2703)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=4 Tax=root RepID=B0MN49_9FIRM
Putative virion core protein (lumpy skin disease virus)
Uncharacterized protein {ECO:0000313|EMBL:EDS00972.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_1343_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2734..3651)
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV70_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96989.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_1343_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4428..7562)
DNA (3135bp) protein (1045aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00962.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_1343_7
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7564..9555)
DNA (1992bp) protein (664aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RKL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC48300.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_1343_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9832..10884
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Eubacterium siraeum RepID=UPI0002F85457
Polysaccharide deacetylase {ECO:0000313|EMBL:EDS00960.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
putative polysaccharide deacetylase
L1_008_000M1_scaffold_1343_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10911..11825
DNA (915bp) protein (305aa)
Integral membrane protein CcmA involved in cell shape determination n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV68_9FIRM
Integral membrane protein CcmA involved in cell shape determination
Integral membrane protein CcmA involved in cell shape determination {ECO:0000313|EMBL:CBK96987.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_1343_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11894..12514
DNA (621bp) protein (207aa)
Predicted HD-superfamily hydrolase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV67_9FIRM
Predicted HD-superfamily hydrolase
Predicted HD-superfamily hydrolase {ECO:0000313|EMBL:CBK96986.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_1343_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12582..13151)
DNA (570bp) protein (190aa)
Putative manganese efflux pump MntP n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV66_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted membrane protein
L1_008_000M1_scaffold_1343_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13716..14258
DNA (543bp) protein (181aa)
Rubrerythrin n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV64_9FIRM
Rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:CBK96983.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_1343_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14451..15404
DNA (954bp) protein (318aa)
Hpr(Ser) kinase/phosphatase (EC:2.7.1.- 2.7.11.- 2.7.4.-)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
HPr kinase/phosphorylase n=4 Tax=root RepID=D4MHU2_9FIRM
L1_008_000M1_scaffold_1343_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15478..16221
DNA (744bp) protein (248aa)
Histidinol phosphatase and related hydrolases of the PHP family n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHU1_9FIRM
Histidinol phosphatase and related hydrolases of the PHP family
Histidinol phosphatase and related hydrolases of the PHP family {ECO:0000313|EMBL:CBL33324.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_1343_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16280..17233
DNA (954bp) protein (318aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.2)
Transcriptional regulator/sugar kinase n=3 Tax=Eubacterium RepID=D4JV61_9FIRM
ROK family protein {ECO:0000313|EMBL:EDS00952.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_1343_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17298..18203
DNA (906bp) protein (302aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RKL8_9FIRM
L1_008_000M1_scaffold_1343_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18452..19321
DNA (870bp) protein (290aa)
UPF0042 nucleotide-binding protein EUS_19210 n=2 Tax=root RepID=D4JV60_9FIRM
Predicted P-loop-containing kinase
Nucleotide-binding protein EUS_19210 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_1343_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19345..19803
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHT8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33321.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_1343_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19816..20778
DNA (963bp) protein (321aa)
translation initiation factor 2 n=1 Tax=Lachnospiraceae bacterium NK4A136 RepID=UPI0003B573C4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL01816.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_008_000M1_scaffold_1343_20
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20810..21673
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=R6RSJ6_9FIRM
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|SAAS:SAAS00015186}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_1343_21
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21676..25098
DNA (3423bp) protein (1141aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III alpha subunit n=2 Tax=root RepID=R6RKM3_9FIRM
L1_008_000M1_scaffold_1343_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25206..26165
DNA (960bp) protein (320aa)
6-phosphofructokinase (EC:2.7.1.11)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339, ECO:0000313|EMBL:CBK96977.1};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
6-phosphofructokinase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV58_9FIRM
L1_008_000M1_scaffold_1343_23
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26407..27033
DNA (627bp) protein (209aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MN38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC48317.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Protein of unknown function (DUF1393).
L1_008_000M1_scaffold_1343_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27055..27852
DNA (798bp) protein (266aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000313|EMBL:CBK96974.1}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000313|EMBL:CBK96974.1};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Pyrroline-5-carboxylate reductase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV55_9FIRM
L1_008_000M1_scaffold_1343_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28440..30821
DNA (2382bp) protein (794aa)
Ferrous iron transporter FeoB n=2 Tax=root RepID=D4JV54_9FIRM
Ferrous iron transporter FeoB {ECO:0000313|EMBL:CBK96973.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
ferrous iron transporter FeoB
L1_008_000M1_scaffold_1343_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31349..32854)
DNA (1506bp) protein (502aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV52_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96971.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_1343_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32851..33333)
DNA (483bp) protein (161aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHT0_9FIRM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBL33313.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_1343_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33586..35571
DNA (1986bp) protein (662aa)
Methyl-accepting chemotaxis protein n=3 Tax=root RepID=D4JV50_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBK96969.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_1343_29
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35690..36220
DNA (531bp) protein (177aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RSK7_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDC48324.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_1343_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36217..36903
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV48_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96967.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Displaying items 1-30 of 46 in total

View Taxonomy