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L1_008_000M1_scaffold_1545

Search features with annotation key words

Displaying items 31-57 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1545_31
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27785..29104)
DNA (1320bp) protein (440aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6CQV4_9CLOT
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDA67627.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
putative ABC transporter substrate-binding protein
L1_008_000M1_scaffold_1545_32
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29397..29987)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77547.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein of unknown function (DUF1393).
L1_008_000M1_scaffold_1545_33
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31176..31451)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ2_9FIRM
DNA-binding protein HU {ECO:0000313|EMBL:EFB75927.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial nucleoid DNA-binding protein
L1_008_000M1_scaffold_1545_34
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31768..35007)
DNA (3240bp) protein (1080aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ4_9FIRM
L1_008_000M1_scaffold_1545_35
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35009..36139)
DNA (1131bp) protein (377aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ5_9FIRM
L1_008_000M1_scaffold_1545_36
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36427..37023)
DNA (597bp) protein (199aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
orotate phosphoribosyltransferase, Thermus family (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ6_9FIRM
L1_008_000M1_scaffold_1545_37
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37286..38230)
DNA (945bp) protein (315aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ7_9FIRM
L1_008_000M1_scaffold_1545_38
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(38230..39012)
DNA (783bp) protein (261aa)
Dihydroorotate dehydrogenase, electron transfer subunit {ECO:0000313|EMBL:EFB75933.1}; EC=1.3.5.2 {ECO:0000313|EMBL:EFB75933.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Dihydroorotate dehydrogenase, electron transfer subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ8_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L1_008_000M1_scaffold_1545_39
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38993..39859)
DNA (867bp) protein (289aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ9_9FIRM
L1_008_000M1_scaffold_1545_40
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39913..41100)
DNA (1188bp) protein (396aa)
dihydroorotase (EC:3.5.2.3)
Amidohydrolase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN00_9FIRM
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1545_41
unknown

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comp(41185..41844)
DNA (660bp) protein (220aa)

This feature has no annotations

L1_008_000M1_scaffold_1545_42
unknown

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comp(42042..42314)
DNA (273bp) protein (91aa)

This feature has no annotations

L1_008_000M1_scaffold_1545_43
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(43309..43584)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76145.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_008_000M1_scaffold_1545_44

Not on your lists

comp(43716..44270)
DNA (555bp) protein (185aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
RNA polymerase factor sigma-70 n=1 Tax=human gut metagenome RepID=K1T694_9ZZZZ
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EKC68602.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_1545_45
unknown

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comp(44493..44621)
DNA (129bp) protein (43aa)

This feature has no annotations

L1_008_000M1_scaffold_1545_46
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(44698..45819)
DNA (1122bp) protein (374aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.41 4.1.1.3)
Sodium ion-translocating decarboxylase beta subunit n=1 Tax=Eubacterium sp. CAG:841 RepID=R7G001_9FIRM
Sodium ion-translocating decarboxylase beta subunit {ECO:0000313|EMBL:CDE20113.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
L1_008_000M1_scaffold_1545_47

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comp(46083..46625)
DNA (543bp) protein (181aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SXZ8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC52166.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MATE efflux family protein
L1_008_000M1_scaffold_1545_48
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(46781..47506)
DNA (726bp) protein (242aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNZ9_9FIRM
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:EFB75495.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyridoxal phosphate enzyme, YggS family
L1_008_000M1_scaffold_1545_49
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(47510..48082)
DNA (573bp) protein (191aa)
UPF0340 protein SUBVAR_06114 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP00_9FIRM
UPF0340 protein SUBVAR_06114 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical protein TIGR01440
L1_008_000M1_scaffold_1545_50
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48251..49339)
DNA (1089bp) protein (363aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Kinase, PfkB family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR51_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:EFB74898.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1545_51
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

49701..50501
DNA (801bp) protein (267aa)
ABC-2 type transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM25_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L1_008_000M1_scaffold_1545_52
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50515..51261
DNA (747bp) protein (249aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM24_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76289.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L1_008_000M1_scaffold_1545_53

Not on your lists

51261..52280
DNA (1020bp) protein (340aa)
Glycosyltransferases involved in cell wall biogenesis (Fragment) n=1 Tax=human gut metagenome RepID=K1T4A0_9ZZZZ
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:EKC54281.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1545_54
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

52347..54152
DNA (1806bp) protein (602aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HAF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE35197.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
family 2 glycosyl transferase
L1_008_000M1_scaffold_1545_55
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54201..55958
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H7C3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE35196.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
L1_008_000M1_scaffold_1545_56
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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55976..58291
DNA (2316bp) protein (772aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K685_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42235.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_008_000M1_scaffold_1545_57
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58295..59026
DNA (732bp) protein (244aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB76426.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB76426.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLX8_9FIRM
Glycosyltransferases involved in cell wall biogenesis
Displaying items 31-57 of 57 in total

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