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L1_008_000M1_scaffold_1545

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1545_1

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comp(3..353)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=human gut metagenome RepID=K1U500_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC80342.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1545_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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593..1492
DNA (900bp) protein (300aa)
DnaD domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLL8_9FIRM
DnaD domain protein {ECO:0000313|EMBL:EFB76316.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Replication initiation and membrane attachment protein (DnaB).
L1_008_000M1_scaffold_1545_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1496..2470
DNA (975bp) protein (325aa)
DNA replication protein DnaC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLL9_9FIRM
DNA replication protein DnaC {ECO:0000313|EMBL:EFB76317.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA replication protein
L1_008_000M1_scaffold_1545_4
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2495..3166
DNA (672bp) protein (224aa)
HAD hydrolase, family IA n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LD83_9FIRM
HAD hydrolase, family IA {ECO:0000313|EMBL:EOS56739.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
HAD family hydrolase
L1_008_000M1_scaffold_1545_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3381..5861)
DNA (2481bp) protein (827aa)
E1-E2 ATPase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN72_9FIRM
E1-E2 ATPase {ECO:0000313|EMBL:EFB76007.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase, P-type (transporting), HAD superfamily, subfamily IC
L1_008_000M1_scaffold_1545_6
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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6462..6869
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ERV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX91342.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L1_008_000M1_scaffold_1545_7
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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6872..7072
DNA (201bp) protein (67aa)
Predicted transcriptional regulators n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EF83_9FIRM
Predicted transcriptional regulators {ECO:0000313|EMBL:CCX91340.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_1545_8
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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7093..7632
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JKK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS34764.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein
L1_008_000M1_scaffold_1545_9
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7974..8651
DNA (678bp) protein (226aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Coprococcus eutactus CAG:665 RepID=R5WMF1_9FIRM
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:CCZ93687.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
nicotinamide mononucleotide transporter PnuC
L1_008_000M1_scaffold_1545_10
unknown

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comp(8490..8804)
DNA (315bp) protein (105aa)

This feature has no annotations

L1_008_000M1_scaffold_1545_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8819..9805
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U1Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65156.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
oxidoreductase domain-containing protein
L1_008_000M1_scaffold_1545_12

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comp(10121..10669)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=human gut metagenome RepID=K1S5Z9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC49160.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1545_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10748..11593)
DNA (846bp) protein (282aa)
Glycerophosphodiester phosphodiesterase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR2_9FIRM
Glycerophosphodiester phosphodiesterase family protein {ECO:0000313|EMBL:EFB76197.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycerophosphoryl diester phosphodiesterase
L1_008_000M1_scaffold_1545_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11851..12537
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR3_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB76198.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_1545_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12556..14082
DNA (1527bp) protein (509aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR4_9FIRM
Signal transduction histidine kinase
L1_008_000M1_scaffold_1545_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14129..14662
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76200.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1545_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14777..15250)
DNA (474bp) protein (158aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ09_9FIRM
L1_008_000M1_scaffold_1545_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15309..16241)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75202.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1545_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16580..17932)
DNA (1353bp) protein (451aa)
Transporter, major facilitator family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ11_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFB75203.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MDR-type permease
L1_008_000M1_scaffold_1545_20

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comp(18123..19232)
DNA (1110bp) protein (370aa)
Membrane protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U7T3_9ZZZZ
Membrane protein {ECO:0000313|EMBL:EKC81357.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1545_21

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comp(19384..19935)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1RL39_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC49352.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1545_22

Not on your lists

comp(19942..20529)
DNA (588bp) protein (196aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TDA4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC71167.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1545_23

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comp(20529..21158)
DNA (630bp) protein (210aa)
RNA polymerase sigma factor RpoE (Fragment) n=1 Tax=human gut metagenome RepID=K1TNI1_9ZZZZ
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EKC71168.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_1545_24
unknown

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21269..21502
DNA (234bp) protein (78aa)

This feature has no annotations

L1_008_000M1_scaffold_1545_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21400..22149)
DNA (750bp) protein (250aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EFB77553.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EFB77553.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
exoA; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG8_9FIRM
L1_008_000M1_scaffold_1545_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22165..23511)
DNA (1347bp) protein (449aa)
MATE efflux family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EFB77554.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative efflux protein, MATE family
L1_008_000M1_scaffold_1545_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23669..23959)
DNA (291bp) protein (97aa)
ABC transporter, ATP-binding protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77556.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptide ABC transporter ATP-binding protein
L1_008_000M1_scaffold_1545_28
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24036..25025)
DNA (990bp) protein (330aa)
Putative ABC transporter permease protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6BWM6_9CLOT
Putative ABC transporter permease protein {ECO:0000313|EMBL:CDA67630.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
putative ABC transporter permease protein
L1_008_000M1_scaffold_1545_29
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25028..26131)
DNA (1104bp) protein (368aa)
Putative ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW87_9FIRM
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCY32414.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
putative ABC transporter permease protein
L1_008_000M1_scaffold_1545_30
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26128..27672)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32413.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC transporter ATP-binding protein
Displaying items 1-30 of 57 in total

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