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L1_008_000M1_scaffold_1643

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1643_1
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

Not on your lists

comp(2..1105)
DNA (1104bp) protein (368aa)
PRD domain protein n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2QS31_9FIRM
Putative licABCH operon regulator {ECO:0000313|EMBL:CDD50502.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
hypothetical protein
L1_008_000M1_scaffold_1643_2
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1204..1683
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6P7X4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05987.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
transposase
L1_008_000M1_scaffold_1643_3
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2021..2623
DNA (603bp) protein (201aa)
Integrase catalytic region n=1 Tax=Clostridium sp. CAG:343 RepID=R6N1V6_9CLOT
Integrase catalytic region {ECO:0000313|EMBL:CDC05988.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
integrase catalytic subunit
L1_008_000M1_scaffold_1643_4
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2950..3549
DNA (600bp) protein (200aa)
Nucleoside-triphosphatase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NCG7_9CLOT
Nucleoside-triphosphatase {ECO:0000313|EMBL:CDC05989.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
HAM1/NUDIX hydrolase
L1_008_000M1_scaffold_1643_5
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3582..4202
DNA (621bp) protein (207aa)
rumA-2; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
RNA methyltransferase TrmA family n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4P9_9CLOT
RNA methyltransferase TrmA family {ECO:0000313|EMBL:CDC05990.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_6
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4206..4937
DNA (732bp) protein (244aa)
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
RNA methyltransferase TrmA family n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4P9_9CLOT
RNA methyltransferase TrmA family {ECO:0000313|EMBL:CDC05990.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_7
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5137..5652
DNA (516bp) protein (172aa)
Inner membrane protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FHP8_9CLOT
Inner membrane protein {ECO:0000313|EMBL:CDE14844.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
L1_008_000M1_scaffold_1643_8
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5633..6172
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FJ09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE14845.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
hypothetical protein
L1_008_000M1_scaffold_1643_9
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6747..8237
DNA (1491bp) protein (497aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Clostridium sp. CAG:343 RepID=R6NID0_9CLOT
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:CDC05991.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1643_10
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8243..9073
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6P7Y0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05992.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Predicted membrane protein
L1_008_000M1_scaffold_1643_11
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9304..9681
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N1W2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05993.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1643_12
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10219..11946)
DNA (1728bp) protein (576aa)
fadD1; long-chain-fatty-acid--CoA ligase FadD (EC:6.2.1.3)
AMP-dependent synthetase and ligase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NCH3_9CLOT
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:CDC05994.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_13
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11968..12765)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4Q3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05995.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_14
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12843..14120
DNA (1278bp) protein (426aa)
Gp588 n=1 Tax=Clostridium sp. CAG:343 RepID=R6NIF6_9CLOT
Gp588 {ECO:0000313|EMBL:CDC05996.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Sensor histidine kinase
L1_008_000M1_scaffold_1643_15
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14221..14628
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6P806_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05997.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_16
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14632..16983
DNA (2352bp) protein (784aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N1Y4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05998.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_17
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17017..18147
DNA (1131bp) protein (377aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NCJ8_9CLOT
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:CDC05999.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
diguanylate cyclase
L1_008_000M1_scaffold_1643_18
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18167..18421
DNA (255bp) protein (85aa)
UPF0297 protein BN615_00428 n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4T1_9CLOT
UPF0297 protein BN615_00428 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1643_19
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18423..18857
DNA (435bp) protein (145aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Putative Holliday junction resolvase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NIG2_9CLOT
RNAse H-fold protein YqgF
L1_008_000M1_scaffold_1643_20
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18917..19225
DNA (309bp) protein (103aa)
UPF0473 protein BN615_00430 n=1 Tax=Clostridium sp. CAG:343 RepID=R6P815_9CLOT
UPF0473 protein BN615_00430 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Protein of unknown function (DUF1292).
L1_008_000M1_scaffold_1643_21
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19324..19884
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N1Z9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06003.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_22
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19973..20581
DNA (609bp) protein (203aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NCK8_9CLOT
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:CDC06004.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Sua5/YciO/YrdC/YwlC family protein
L1_008_000M1_scaffold_1643_23
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20622..20756
DNA (135bp) protein (45aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4U1_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1643_24
Clostridium sp. CAG:914, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20867..21547
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:914 RepID=R7M297_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE95189.1}; TaxID=1262846 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:914.;"
hypothetical protein
L1_008_000M1_scaffold_1643_25
Clostridium sp. CAG:914, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21558..21695
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:914 RepID=R7M297_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE95189.1}; TaxID=1262846 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:914.;"
Virulence protein
L1_008_000M1_scaffold_1643_26
Firmicutes bacterium CAG:582, Firmicutes, Bacteria

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22036..23052
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:582 RepID=R6GUM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB28095.1}; TaxID=1262997 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:582.;"
hypothetical protein
L1_008_000M1_scaffold_1643_27
unknown

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23310..24035
DNA (726bp) protein (242aa)

This feature has no annotations

L1_008_000M1_scaffold_1643_28
Clostridium sp. CAG:609, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24491..25000
DNA (510bp) protein (170aa)
DNA-damage-inducible protein D n=1 Tax=Clostridium sp. CAG:609 RepID=R7P6C0_9CLOT
DNA-damage-inducible protein D {ECO:0000313|EMBL:CDF20606.1}; TaxID=1262827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:609.;"
dinD; damage-inducible protein D
L1_008_000M1_scaffold_1643_29
Clostridium sp. CAG:609, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25021..25425
DNA (405bp) protein (135aa)
DNA-damage-inducible protein D n=1 Tax=Clostridium sp. CAG:609 RepID=R7P6C0_9CLOT
DNA-damage-inducible protein D {ECO:0000313|EMBL:CDF20606.1}; TaxID=1262827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:609.;"
DNA-damage-inducible protein
L1_008_000M1_scaffold_1643_30
Clostridium sp. CAG:417, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25434..25994
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:417 RepID=R6STP9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC60904.1}; TaxID=1262804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:417.;"
acetyltransferase
Displaying items 1-30 of 54 in total

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