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L1_008_000M1_scaffold_1731

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1731_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(166..651)
DNA (486bp) protein (162aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM54_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1731_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(660..1448)
DNA (789bp) protein (263aa)
Metallo-beta-lactamase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM55_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EFB75640.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
L1_008_000M1_scaffold_1731_3

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comp(1576..2856)
DNA (1281bp) protein (427aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000313|EMBL:EKC44915.1}; EC=2.5.1.7 {ECO:0000313|EMBL:EKC44915.1};; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
murA3; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Fragment) n=1 Tax=human gut metagenome RepID=K1RTT1_9ZZZZ
L1_008_000M1_scaffold_1731_4

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comp(3079..4980)
DNA (1902bp) protein (634aa)
Peptidase M23 (Fragment) n=1 Tax=human gut metagenome RepID=K1T5N0_9ZZZZ
Peptidase M23 {ECO:0000313|EMBL:EKC68392.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Membrane proteins related to metalloendopeptidases
L1_008_000M1_scaffold_1731_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5048..5707)
DNA (660bp) protein (220aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Pseudouridylate synthases, 23S RNA-specific (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM58_9FIRM
L1_008_000M1_scaffold_1731_6
unknown

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comp(5704..5877)
DNA (174bp) protein (58aa)

This feature has no annotations

L1_008_000M1_scaffold_1731_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6600..6848)
DNA (249bp) protein (83aa)
Pro-sigmaK processing inhibitor BofA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM59_9FIRM
Pro-sigmaK processing inhibitor BofA {ECO:0000313|EMBL:EFB75644.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1731_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6833..7060)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75645.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1731_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7073..8548)
DNA (1476bp) protein (492aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Stage IV sporulation protein A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM61_9FIRM
stage IV sporulation protein A
L1_008_000M1_scaffold_1731_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8563..10128)
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75647.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_008_000M1_scaffold_1731_11

Not on your lists

comp(10390..11031)
DNA (642bp) protein (214aa)
thiamine pyrophosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase (Fragment) n=1 Tax=human gut metagenome RepID=K1SRW0_9ZZZZ
Thiamine diphosphokinase {ECO:0000313|EMBL:EKC49986.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_1731_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11031..11894)
DNA (864bp) protein (288aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM64_9FIRM
L1_008_000M1_scaffold_1731_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11894..13792)
DNA (1899bp) protein (633aa)
Serine/threonine protein kinase (EC:2.7.11.1)
Kinase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM65_9FIRM
Kinase domain protein {ECO:0000313|EMBL:EFB75650.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1731_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13785..14534)
DNA (750bp) protein (250aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Protein phosphatase 2C n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM66_9FIRM
Protein phosphatase 2C {ECO:0000313|EMBL:EFB75651.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1731_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14531..15655)
DNA (1125bp) protein (375aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM67_9FIRM
L1_008_000M1_scaffold_1731_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15726..17048)
DNA (1323bp) protein (441aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM68_9FIRM
L1_008_000M1_scaffold_1731_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17045..17965)
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM69_9FIRM
L1_008_000M1_scaffold_1731_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18023..18538)
DNA (516bp) protein (172aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM70_9FIRM
L1_008_000M1_scaffold_1731_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18560..20815)
DNA (2256bp) protein (752aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
primosomal protein N' (EC:3.6.1.-)
Primosomal protein N n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM71_9FIRM
L1_008_000M1_scaffold_1731_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20852..21430)
DNA (579bp) protein (193aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM72_9FIRM
L1_008_000M1_scaffold_1731_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21464..21718)
DNA (255bp) protein (85aa)
UPF0296 protein HMPREF1032_01013 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXL2_9FIRM
UPF0296 protein HMPREF1032_01013 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1731_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21728..22606)
DNA (879bp) protein (293aa)
TIGR00255 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM74_9FIRM
TIGR00255 family protein {ECO:0000313|EMBL:EFB75659.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical protein TIGR00255
L1_008_000M1_scaffold_1731_23

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comp(22889..24040)
DNA (1152bp) protein (384aa)
methionine adenosyltransferase (EC:2.5.1.6)
Methionine adenosyltransferase (Fragment) n=2 Tax=human gut metagenome RepID=K1UKS4_9ZZZZ
Methionine adenosyltransferase {ECO:0000313|EMBL:EKC72051.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_1731_24
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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comp(24385..25002)
DNA (618bp) protein (206aa)
Predicted membrane protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RXD9_9FIRM
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
Predicted membrane protein
L1_008_000M1_scaffold_1731_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25561..26508
DNA (948bp) protein (316aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL66_9FIRM
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EFB76724.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Small-conductance mechanosensitive channel
L1_008_000M1_scaffold_1731_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26727..27692)
DNA (966bp) protein (322aa)
Phosphate acetyltransferase {ECO:0000313|EMBL:EFB75683.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EFB75683.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pta; phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM98_9FIRM
L1_008_000M1_scaffold_1731_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27900..28142)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75684.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1731_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28289..29119)
DNA (831bp) protein (277aa)
L-rhamnulose 1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Rhamnulose-1-phosphate aldolase n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCX5_9FIRM
L1_008_000M1_scaffold_1731_29
Prevotella bryantii, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29170..30591)
DNA (1422bp) protein (474aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00235488}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00235488};; TaxID=752555 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella bryantii B14.;"
L-arabinose isomerase (EC:5.3.1.4)
arabinose isomerase n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B78788
L1_008_000M1_scaffold_1731_30
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30616..32034)
DNA (1419bp) protein (473aa)
Rhamnulokinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKE1_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:KJF41466.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
rhamnulokinase
Displaying items 1-30 of 44 in total

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