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L1_008_000M1_scaffold_1806

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1806_1
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(138..512)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82313.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1806_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(517..777)
DNA (261bp) protein (87aa)
Plasmid recombination enzyme n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P5T8_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:ERK45865.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L1_008_000M1_scaffold_1806_3
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(791..991)
DNA (201bp) protein (67aa)
Phage integrase n=2 Tax=unclassified Lachnospiraceae RepID=E5XIB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82319.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
integrase
L1_008_000M1_scaffold_1806_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1004..1195)
DNA (192bp) protein (64aa)
Gp27 protein n=1 Tax=Lachnospiraceae bacterium 8_1_57FAA RepID=E5XIB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31469.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_008_000M1_scaffold_1806_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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1400..1933
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18943.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_1806_6
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2229..3422)
DNA (1194bp) protein (398aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ETQ9_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
L1_008_000M1_scaffold_1806_7
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3615..5744)
DNA (2130bp) protein (710aa)
Elongation factor G n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ETR0_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
elongation factor G
L1_008_000M1_scaffold_1806_8
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5817..6287)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ETR1_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
30S ribosomal protein S7
L1_008_000M1_scaffold_1806_9
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6465..6878)
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=2 Tax=Eubacterium RepID=C0ETR2_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
RpsL; 30S ribosomal protein S12
L1_008_000M1_scaffold_1806_10
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7262..10930)
DNA (3669bp) protein (1223aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GSJ9_9FIRM
L1_008_000M1_scaffold_1806_11
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10953..12191)
DNA (1239bp) protein (413aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Eubacterium RepID=C0ETR4_9FIRM
L1_008_000M1_scaffold_1806_12
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12197..14782)
DNA (2586bp) protein (862aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Eubacterium RepID=C0ETR4_9FIRM
L1_008_000M1_scaffold_1806_13
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15111..16052)
DNA (942bp) protein (314aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, pyridine binding domain protein n=2 Tax=Eubacterium RepID=C0ERJ8_9FIRM
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EEG38108.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
L1_008_000M1_scaffold_1806_14
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16040..16879)
DNA (840bp) protein (280aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase, thiamine diphosphate binding domain protein n=2 Tax=Eubacterium RepID=C0ERJ7_9FIRM
Transketolase thiamine diphosphate binding domain protein {ECO:0000313|EMBL:CDB17100.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
L1_008_000M1_scaffold_1806_15
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16963..17616)
DNA (654bp) protein (218aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
transaldolase, putative, TalC family (EC:2.2.1.2)
Probable transaldolase n=2 Tax=Eubacterium RepID=C0ERJ6_9FIRM
L1_008_000M1_scaffold_1806_16
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17869..17988)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG38104.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
L1_008_000M1_scaffold_1806_17
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18109..18534)
DNA (426bp) protein (142aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=2 Tax=Eubacterium RepID=C0ESC7_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CDB17102.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
iscU; iron-sulfur cluster assembly protein IscU
L1_008_000M1_scaffold_1806_18
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18524..19711)
DNA (1188bp) protein (396aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Cysteine desulfurase NifS n=2 Tax=Eubacterium RepID=C0ESC6_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1806_19
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19951..20361)
DNA (411bp) protein (137aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Eubacterium RepID=C0ESC4_9FIRM
Transcriptional regulator Rrf2 family {ECO:0000313|EMBL:CDB17104.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
BadM/Rrf2 family transcriptional regulator
L1_008_000M1_scaffold_1806_20
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20472..21215)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ESC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG37826.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
L1_008_000M1_scaffold_1806_21
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22015..23331
DNA (1317bp) protein (439aa)
MATE efflux family protein n=2 Tax=Eubacterium RepID=C0F035_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDB17106.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
putative efflux protein, MATE family
L1_008_000M1_scaffold_1806_22
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23715..24149)
DNA (435bp) protein (145aa)
Flavodoxin n=2 Tax=Eubacterium RepID=C0F034_9FIRM
Flavodoxin {ECO:0000313|EMBL:EEG35132.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
flavodoxin
L1_008_000M1_scaffold_1806_23
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24228..24845)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6FVA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB17108.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
L1_008_000M1_scaffold_1806_24
unknown

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24960..25199
DNA (240bp) protein (80aa)

This feature has no annotations

L1_008_000M1_scaffold_1806_25
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25521..27620)
DNA (2100bp) protein (700aa)
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EEG35130.1}; EC=3.6.3.- {ECO:0000313|EMBL:EEG35130.1};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Heavy metal translocating P-type ATPase n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0F032_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1806_26
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27811..28143)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=C0F031_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB17440.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
L1_008_000M1_scaffold_1806_27
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28480..28692)
DNA (213bp) protein (71aa)
FeoA domain protein n=2 Tax=Eubacterium RepID=R6G7G0_9FIRM
FeoA domain protein {ECO:0000313|EMBL:CDB17439.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Fe2+ transport system protein A
L1_008_000M1_scaffold_1806_28
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28893..30155)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0F029_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG35127.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
hypothetical protein
L1_008_000M1_scaffold_1806_29
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30403..31152)
DNA (750bp) protein (250aa)
Transcriptional regulator LuxR family n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GTJ6_9FIRM
Transcriptional regulator LuxR family {ECO:0000313|EMBL:CDB17437.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
LuxR family ATP-dependent transcriptional regulator
L1_008_000M1_scaffold_1806_30
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31348..32601)
DNA (1254bp) protein (418aa)
Glycosyltransferase, group 2 family protein n=2 Tax=Eubacterium RepID=C0F026_9FIRM
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDB17436.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
Displaying items 1-30 of 40 in total

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