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L1_008_000M1_scaffold_1825

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1825_1
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..309)
DNA (309bp) protein (103aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWV4_9FIRM
putative transcriptional regulator
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EDM85982.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L1_008_000M1_scaffold_1825_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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403..1176
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77407.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted DNA-binding proteins
L1_008_000M1_scaffold_1825_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1209..1526
DNA (318bp) protein (106aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77406.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_1825_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1633..1941
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77405.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
putative signal transduction histidine kinase
L1_008_000M1_scaffold_1825_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1941..2252
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CRL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80088.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
diguanylate cyclase (GGDEF) domain
L1_008_000M1_scaffold_1825_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2373..2642
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80090.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L1_008_000M1_scaffold_1825_7
unknown

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comp(2520..2765)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00035D72EB
L1_008_000M1_scaffold_1825_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2886..3785
DNA (900bp) protein (300aa)
Thioredoxin reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase n=2 Tax=Ruminococcus RepID=C6JCA8_9FIRM
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:EES77402.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_1825_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3899..4768
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80092.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
sulfite reductase, beta subunit
L1_008_000M1_scaffold_1825_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4781..5032
DNA (252bp) protein (84aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80093.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted redox protein, regulator of disulfide bond formation
L1_008_000M1_scaffold_1825_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5032..5349
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCA5_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Thioredoxin domain-containing protein
L1_008_000M1_scaffold_1825_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5379..5585
DNA (207bp) protein (69aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCA4_9FIRM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:EES77398.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
thiamine biosynthesis protein ThiS
L1_008_000M1_scaffold_1825_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5592..6422
DNA (831bp) protein (277aa)
Thiazole biosynthesis adenylyltransferase ThiF n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCA3_9FIRM
Thiazole biosynthesis adenylyltransferase ThiF {ECO:0000313|EMBL:EES77397.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
L1_008_000M1_scaffold_1825_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6459..6890
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80097.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted metal-dependent protease of the PAD1/JAB1 superfamily
L1_008_000M1_scaffold_1825_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7180..8895)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77226.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1825_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9174..10151
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77225.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted phosphosugar isomerases
L1_008_000M1_scaffold_1825_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10176..10862
DNA (687bp) protein (229aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED (EC:5.4.2.6)
HAD hydrolase, family IA n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBT0_9FIRM
HAD hydrolase, family IA {ECO:0000313|EMBL:EES77224.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_1825_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10846..11268
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77223.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Phosphotransferase system, mannose/fructose-specific component IIA
L1_008_000M1_scaffold_1825_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11265..11729
DNA (465bp) protein (155aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77222.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_1825_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11745..12488
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5M0J6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM99406.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L1_008_000M1_scaffold_1825_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12488..13315
DNA (828bp) protein (276aa)
PTS system, mannose/fructose/sorbose-specific IID component (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77221.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_1825_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13565..13822
DNA (258bp) protein (86aa)
HPr family phosphocarrier n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS6_9FIRM
HPr family phosphocarrier {ECO:0000313|EMBL:EES77220.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Phosphotransferase System HPr (HPr) Family
L1_008_000M1_scaffold_1825_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13858..15477
DNA (1620bp) protein (540aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS5_9FIRM
L1_008_000M1_scaffold_1825_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15645..16394)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77218.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Transcriptional regulators
L1_008_000M1_scaffold_1825_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16895..18484
DNA (1590bp) protein (530aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Ruminococcus RepID=C6JCA1_9FIRM
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EES77395.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1825_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18728..20311)
DNA (1584bp) protein (528aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=2 Tax=Ruminococcus RepID=C6JCA0_9FIRM
L1_008_000M1_scaffold_1825_27
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20719..21633
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030321C2
Uncharacterized protein {ECO:0000313|EMBL:CCY34299.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
oligopeptide transport system permease OppB
L1_008_000M1_scaffold_1825_28
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21636..22994
DNA (1359bp) protein (453aa)
ABC transporter permease n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002EA05B2
Uncharacterized protein {ECO:0000313|EMBL:CCY34300.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
oligopeptide transport system permease OppC
L1_008_000M1_scaffold_1825_29
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23010..24017
DNA (1008bp) protein (336aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DEE8B4
Oligopeptide/dipeptide ABC transporter ATP-binding protein domain {ECO:0000313|EMBL:CCY34301.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
oligopeptide/dipeptide ABC transporter ATPase
L1_008_000M1_scaffold_1825_30
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24019..25032
DNA (1014bp) protein (338aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FA2CBF
Uncharacterized protein {ECO:0000313|EMBL:CCY34302.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
Displaying items 1-30 of 50 in total

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