ggKbase home page

L1_008_000M1_scaffold_1900

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1900_1
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..1147
DNA (1146bp) protein (382aa)
Stage IV sporulation protein B n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKY3_9CLOT
Stage IV sporulation protein B {ECO:0000313|EMBL:CDC06896.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
SpoIVB peptidase
L1_008_000M1_scaffold_1900_2
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1288..1929
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N716_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06895.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Metallophosphoesterase
L1_008_000M1_scaffold_1900_3
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1964..3346)
DNA (1383bp) protein (461aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NET4_9CLOT
L1_008_000M1_scaffold_1900_4
Clostridium sp. CAG:575, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3564..3881
DNA (318bp) protein (106aa)
Putative septation protein SpoVG n=2 Tax=environmental samples RepID=R6HE23_9CLOT
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1262823 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:575.;"
stage V sporulation protein G
L1_008_000M1_scaffold_1900_5
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4012..4578
DNA (567bp) protein (189aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium sp. CAG:343 RepID=R6PAH3_9CLOT
peptidyl-tRNA hydrolase
L1_008_000M1_scaffold_1900_6
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4600..5697
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKX8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06891.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
ribonuclease, Rne/Rng family
L1_008_000M1_scaffold_1900_7
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5828..7195
DNA (1368bp) protein (456aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
MiaB-like tRNA modifying enzyme YliG (EC:1.3.1.74)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Clostridium sp. CAG:343 RepID=R6N712_9CLOT
L1_008_000M1_scaffold_1900_8
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7207..8580
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NES9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06889.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1900_9
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8672..8791
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4B6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06888.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1900_10
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8867..9043
DNA (177bp) protein (59aa)
Two component transcriptional regulator winged helix family n=1 Tax=Clostridium sp. CAG:343 RepID=R6PAG9_9CLOT
Two component transcriptional regulator winged helix family {ECO:0000313|EMBL:CDC06887.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1900_11
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9052..9912)
DNA (861bp) protein (287aa)
Cation diffusion facilitator family transporter n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKX4_9CLOT
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:CDC06886.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
cation diffusion facilitator family transporter
L1_008_000M1_scaffold_1900_12
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10130..10480
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N706_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06885.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1900_13
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10494..11030)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NES4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06884.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1900_14
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11184..12176)
DNA (993bp) protein (331aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4B2_9CLOT
L1_008_000M1_scaffold_1900_15
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12370..13353
DNA (984bp) protein (328aa)
glycosyl transferase (EC:2.4.1.-)
Glycosyltransferase group 2 family protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PAG2_9CLOT
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDC06882.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1900_16
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13395..13592
DNA (198bp) protein (66aa)
Glycosyltransferase group 2 family protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PAG2_9CLOT
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDC06882.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1900_17
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13661..15043
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKW9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06881.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1900_18
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15176..15646
DNA (471bp) protein (157aa)
Ribosome maturation factor RimP n=1 Tax=Clostridium sp. CAG:343 RepID=R6N702_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1900_19
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15661..16779
DNA (1119bp) protein (373aa)
NusA antitermination factor n=1 Tax=Clostridium sp. CAG:343 RepID=R6NER9_9CLOT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
NusA antitermination factor
L1_008_000M1_scaffold_1900_20
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16819..17079
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4A9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06878.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1900_21
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17069..17389
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PAF7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06877.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
50S ribosomal protein L7Ae/L30e/S12e/Gadd45
L1_008_000M1_scaffold_1900_22
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17367..20312
DNA (2946bp) protein (982aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKW5_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
translation initiation factor 2
L1_008_000M1_scaffold_1900_23
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20359..20724
DNA (366bp) protein (122aa)
Ribosome-binding factor A n=1 Tax=Clostridium sp. CAG:343 RepID=R6N6Z7_9CLOT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
rbfA; ribosome-binding factor A
L1_008_000M1_scaffold_1900_24
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20727..21674
DNA (948bp) protein (316aa)
Exopolyphosphatase-like enzyme n=1 Tax=Clostridium sp. CAG:343 RepID=R6NER4_9CLOT
Exopolyphosphatase-like enzyme {ECO:0000313|EMBL:CDC06874.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
exopolyphosphatase-like protein
L1_008_000M1_scaffold_1900_25
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21687..22553
DNA (867bp) protein (289aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. CAG:343 RepID=R6N4A4_9CLOT
truB; tRNA pseudouridine synthase B
L1_008_000M1_scaffold_1900_26
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22660..23508
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PAF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06872.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1900_27
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23672..24661
DNA (990bp) protein (330aa)
Penicillin-binding protein 1A family n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKV9_9CLOT
Penicillin-binding protein 1A family {ECO:0000313|EMBL:CDC06871.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
1A family penicillin-binding protein
L1_008_000M1_scaffold_1900_28
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24745..26265
DNA (1521bp) protein (507aa)
Penicillin-binding protein 1A family n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKV9_9CLOT
Penicillin-binding protein 1A family {ECO:0000313|EMBL:CDC06871.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
penicillin-binding protein
L1_008_000M1_scaffold_1900_29
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26337..27731
DNA (1395bp) protein (465aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Cysteine--tRNA ligase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N6Z2_9CLOT
cysteinyl-tRNA synthetase
L1_008_000M1_scaffold_1900_30
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27745..28749
DNA (1005bp) protein (335aa)
UDP-glucose 4-epimerase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NEQ8_9CLOT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDC06869.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
UDP-galactose 4-epimerase
Displaying items 1-30 of 44 in total

View Taxonomy