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L1_008_000M1_scaffold_1954

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1954_1
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..965)
DNA (963bp) protein (321aa)
Citrate synthase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SX55_CLOC7
Citrate synthase
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L1_008_000M1_scaffold_1954_2
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(1070..1597)
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EC76_CHLL2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM72451.1}; TaxID=194439 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 /; TLS).;"
L1_008_000M1_scaffold_1954_3
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1688..2821)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9ND42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS81043.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Putative endonuclease-exonuclease-phosphatase family protein
L1_008_000M1_scaffold_1954_4
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2958..4547
DNA (1590bp) protein (530aa)
Peptide chain release factor 3 n=1 Tax=Coprococcus catus GD/7 RepID=D4JBS8_9FIRM
bacterial peptide chain release factor 3 (bRF-3)
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_1954_5
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4602..5042
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Coprococcus catus GD/7 RepID=D4J6H5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK79946.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_1954_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5026..5901)
DNA (876bp) protein (292aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=16 Tax=Clostridium difficile RepID=T2XA84_CLODI
LysR family transcriptional regulator {ECO:0000313|EMBL:CCK98970.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
hypothetical protein
L1_008_000M1_scaffold_1954_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6019..6636
DNA (618bp) protein (206aa)
Chromate transporter family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DQZ7_CLODI
Chromate transporter family protein {ECO:0000313|EMBL:EQF29172.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein
L1_008_000M1_scaffold_1954_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6633..7199
DNA (567bp) protein (189aa)
Chromate transporter family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DS26_CLODI
Chromate transporter family protein {ECO:0000313|EMBL:EQF29176.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
chromate transporter
L1_008_000M1_scaffold_1954_9
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7298..7678
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N1ZRF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ16688.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
TnpV family protein
L1_008_000M1_scaffold_1954_10
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7869..8543
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J4J0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26107.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_1954_11
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8540..9085
DNA (546bp) protein (182aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Putative sensor histidine kinase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DNL4_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_008_000M1_scaffold_1954_12
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9024..9737
DNA (714bp) protein (238aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IW74_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_008_000M1_scaffold_1954_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9845..10516
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46987.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L1_008_000M1_scaffold_1954_14
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10550..11221
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IW01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26110.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L1_008_000M1_scaffold_1954_15
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11233..13599
DNA (2367bp) protein (789aa)
CotH protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EC42_9CLOT
CotH protein {ECO:0000313|EMBL:EEG30932.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
cotH; spore coat protein CotH
L1_008_000M1_scaffold_1954_16
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14293..14721
DNA (429bp) protein (143aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2DGC9_CLOSY
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ERI80522.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L1_008_000M1_scaffold_1954_17
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15255..15476)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Coprococcus catus GD/7 RepID=D4JAV0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK81471.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_1954_18
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15699..17015)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HBV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE37129.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L1_008_000M1_scaffold_1954_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17061..18257)
DNA (1197bp) protein (399aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FQE4_9FIRM
L1_008_000M1_scaffold_1954_20
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18254..18709)
DNA (456bp) protein (152aa)
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Blautia sp. CAG:52 RepID=R6G6X5_9FIRM
Cytidine deaminase {ECO:0000313|EMBL:CDB21243.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
L1_008_000M1_scaffold_1954_21
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18711..19364)
DNA (654bp) protein (218aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=3 Tax=Anaerostipes RepID=B0MET2_9FIRM
L1_008_000M1_scaffold_1954_22
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19387..19662)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7INS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE53394.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
hypothetical protein
L1_008_000M1_scaffold_1954_23
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19693..20703)
DNA (1011bp) protein (337aa)
membrane protein n=1 Tax=[Streptococcus] pleomorphus RepID=UPI0003B6B175
Membrane protease subunits, stomatin/prohibitin homologs
Membrane protease subunits, stomatin/prohibitin homologs {ECO:0000313|EMBL:CBK88417.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L1_008_000M1_scaffold_1954_24
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20841..21599)
DNA (759bp) protein (253aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21 3.6.3.-)
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBK79933.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBK79933.1};; EC=3.6.3.21 {ECO:0000313|EMBL:CBK79933.1};; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Coprococcus catus GD/7 RepID=D4J6G2_9FIRM
L1_008_000M1_scaffold_1954_25
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21611..22261)
DNA (651bp) protein (217aa)
Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Coprococcus catus GD/7 RepID=D4J6G1_9FIRM
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBK79932.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_1954_26
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22361..23239)
DNA (879bp) protein (293aa)
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Coprococcus catus GD/7 RepID=D4J6G0_9FIRM
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBK79931.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_1954_27
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23378..24697)
DNA (1320bp) protein (440aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Roseburia sp. CAG:303 RepID=R7IQT2_9FIRM
L1_008_000M1_scaffold_1954_28
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

24874..25758
DNA (885bp) protein (295aa)
Lipid kinase YegS/Rv2252/BmrU family n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F2M9_9FIRM
Lipid kinase YegS/Rv2252/BmrU family {ECO:0000313|EMBL:CDB03664.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L1_008_000M1_scaffold_1954_29
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25828..26052
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036B3A68
Uncharacterized protein {ECO:0000313|EMBL:CCY31630.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_008_000M1_scaffold_1954_30
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26049..26360
DNA (312bp) protein (104aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C9L6Z3_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC08557.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
Displaying items 1-30 of 37 in total

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