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L1_008_000M1_scaffold_2693

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2693_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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821..2497
DNA (1677bp) protein (559aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
2-isopropylmalate synthase, yeast type (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1A3_9FIRM
L1_008_000M1_scaffold_2693_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2639..3565
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82565.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_2693_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3901..4098)
DNA (198bp) protein (66aa)
Small, acid-soluble spore proteins, alpha/beta type n=2 Tax=Ruminococcus RepID=D4L537_9FIRM
Small, acid-soluble spore proteins, alpha/beta type.
Small acid-soluble spore proteins alpha/beta type {ECO:0000313|EMBL:CCX82566.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_2693_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4364..6793)
DNA (2430bp) protein (810aa)
X-X-X-Leu-X-X-Gly heptad repeats n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1A6_9FIRM
X-X-X-Leu-X-X-Gly heptad repeats {ECO:0000313|EMBL:CCX82567.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
X-X-X-Leu-X-X-Gly heptad repeats
L1_008_000M1_scaffold_2693_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6793..8886)
DNA (2094bp) protein (698aa)
Predicted exporters of the RND superfamily n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQX6_9FIRM
Predicted exporters of the RND superfamily {ECO:0000313|EMBL:CCX82568.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted exporters of the RND superfamily
L1_008_000M1_scaffold_2693_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9136..9702)
DNA (567bp) protein (189aa)
Transcriptional regulator n=2 Tax=Ruminococcus RepID=D4L540_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL14735.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_2693_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9977..10606)
DNA (630bp) protein (210aa)
Phosphopantetheinyl transferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQN7_9FIRM
Phosphopantetheinyl transferase {ECO:0000313|EMBL:CCX82570.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phosphopantetheinyl transferase
L1_008_000M1_scaffold_2693_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10575..11063)
DNA (489bp) protein (163aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Deoxycytidylate deaminase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1B1_9FIRM
Deoxycytidylate deaminase {ECO:0000313|EMBL:CCX82572.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_2693_9
unknown

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comp(11042..11170)
DNA (129bp) protein (43aa)

This feature has no annotations

L1_008_000M1_scaffold_2693_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11133..11369)
DNA (237bp) protein (79aa)
Looped-hinge helix DNA binding domain, AbrB family n=2 Tax=Ruminococcus RepID=D4L543_9FIRM
looped-hinge helix DNA binding domain, AbrB family
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:CBL14738.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_2693_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11482..12114
DNA (633bp) protein (211aa)
Uncharacterized membrane protein, required for spore maturation in B.subtilis n=2 Tax=Ruminococcus RepID=D4L544_9FIRM
Uncharacterized membrane protein, required for spore maturation in B.subtilis.
Uncharacterized membrane protein, required for spore maturation in B.subtilis {ECO:0000313|EMBL:CBL14739.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_2693_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12131..12643
DNA (513bp) protein (171aa)
Uncharacterized membrane protein n=2 Tax=root RepID=D4L545_9FIRM
Uncharacterized membrane protein
Uncharacterized membrane protein {ECO:0000313|EMBL:CBL14740.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_2693_13
unknown

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12640..12900
DNA (261bp) protein (87aa)

This feature has no annotations

L1_008_000M1_scaffold_2693_14
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12887..13120
DNA (234bp) protein (78aa)
MATE efflux family protein n=2 Tax=Ruminococcus lactaris RepID=B5CL11_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL22633.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
Displaying 14 items

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