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L1_008_000M1_scaffold_2823

Search features with annotation key words

Displaying items 31-60 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2823_31
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28692..30119)
DNA (1428bp) protein (476aa)
Transcriptional regulator, GntR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN9_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFB76174.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, GntR family
L1_008_000M1_scaffold_2823_32

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30291..30956
DNA (666bp) protein (222aa)
Membrane protein containing DUF1393 (Fragment) n=1 Tax=human gut metagenome RepID=K1VAR7_9ZZZZ
Membrane protein containing DUF1393 {ECO:0000313|EMBL:EKC81026.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted membrane protein
L1_008_000M1_scaffold_2823_33

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31178..32572
DNA (1395bp) protein (465aa)
Protein containing Lipase, GDSL domain protein {ECO:0000313|EMBL:EKC67997.1}; EC=3.-.-.- {ECO:0000313|EMBL:EKC67997.1};; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Protein containing Lipase, GDSL domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1T4R1_9ZZZZ
L1_008_000M1_scaffold_2823_34

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comp(32803..33219)
DNA (417bp) protein (139aa)
Iron-sulfur cluster assembly transcription factor IscR n=1 Tax=human gut metagenome RepID=K1SLV7_9ZZZZ
Iron-sulfur cluster assembly transcription factor IscR {ECO:0000313|EMBL:EKC54815.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transcriptional regulator, BadM/Rrf2 family
L1_008_000M1_scaffold_2823_35
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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33820..34761
DNA (942bp) protein (314aa)
metQ; D-methionine ABC transporter substrate binding protein MetI (EC:3.6.3.-)
Lipoprotein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN3_9FIRM
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_2823_36
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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34947..35951
DNA (1005bp) protein (335aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN2_9FIRM
ABC transporter
L1_008_000M1_scaffold_2823_37
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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35944..36651
DNA (708bp) protein (236aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN1_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB76166.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type metal ion transport system, permease component
L1_008_000M1_scaffold_2823_38
unknown

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comp(36768..36983)
DNA (216bp) protein (72aa)

This feature has no annotations

L1_008_000M1_scaffold_2823_39
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(37112..38164)
DNA (1053bp) protein (351aa)
ltaE; Low specificity L-threonine aldolase LtaE (EC:4.1.2.5)
Beta-eliminating lyase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN0_9FIRM
Beta-eliminating lyase {ECO:0000313|EMBL:EFB76165.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_2823_40
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(38290..39426)
DNA (1137bp) protein (379aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG4_9FIRM
L1_008_000M1_scaffold_2823_41

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comp(39476..40207)
DNA (732bp) protein (244aa)
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=human gut metagenome RepID=K1SZX0_9ZZZZ
Glucosamine-6-phosphate deaminase {ECO:0000313|EMBL:EKC59355.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_2823_42

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comp(40387..40869)
DNA (483bp) protein (161aa)
Protein containing Phosphotransferase system EIIB/cysteine phosphorylation site domain protein {ECO:0000313|EMBL:EKC48175.1}; EC=2.7.1.- {ECO:0000313|EMBL:EKC48175.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Protein containing Phosphotransferase system EIIB/cysteine phosphorylation site domain protein n=1 Tax=human gut metagenome RepID=K1S3B9_9ZZZZ
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L1_008_000M1_scaffold_2823_43
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(41086..42555)
DNA (1470bp) protein (490aa)
Putative PTS system, N-acetylglucosamine-specific IIBC component n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1G9_9FIRM
Putative PTS system, N-acetylglucosamine-specific IIBC component {ECO:0000313|EMBL:EEU98179.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L1_008_000M1_scaffold_2823_44
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(43156..43719)
DNA (564bp) protein (188aa)
Putative proton-coupled thiamine transporter YuaJ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG0_9FIRM
Putative proton-coupled thiamine transporter YuaJ {ECO:0000313|EMBL:EFB76095.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
probable proton-coupled thiamine transporter YuaJ
L1_008_000M1_scaffold_2823_45
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43966..45678)
DNA (1713bp) protein (571aa)
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836, ECO:0000313|EMBL:CBK99991.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K142_9FIRM
L1_008_000M1_scaffold_2823_46

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46118..47236
DNA (1119bp) protein (373aa)
Membrane protein (Fragment) n=1 Tax=human gut metagenome RepID=K1RHD8_9ZZZZ
Membrane protein {ECO:0000313|EMBL:EKC48007.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_2823_47
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(47510..48823)
DNA (1314bp) protein (438aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNF8_9FIRM
L1_008_000M1_scaffold_2823_48

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comp(49009..49779)
DNA (771bp) protein (257aa)
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase (Fragment) n=1 Tax=human gut metagenome RepID=K1TFM5_9ZZZZ
Glutamate 5-kinase {ECO:0000313|EMBL:EKC58026.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_2823_49
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(49779..50579)
DNA (801bp) protein (267aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNF6_9FIRM
L1_008_000M1_scaffold_2823_50
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50795..51808
DNA (1014bp) protein (338aa)
4Fe-4S binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNF5_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EFB76090.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted oxidoreductases of the aldo/keto reductase family
L1_008_000M1_scaffold_2823_51

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52019..52750
DNA (732bp) protein (244aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SEQ9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC52075.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_2823_52
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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53087..54253
DNA (1167bp) protein (389aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Aminotransferase, class V n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNF4_9FIRM
Aminotransferase, class V {ECO:0000313|EMBL:EFB76089.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_2823_53
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54432..55625
DNA (1194bp) protein (398aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Probable tRNA sulfurtransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNF3_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L1_008_000M1_scaffold_2823_54
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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55671..56981
DNA (1311bp) protein (437aa)
Putative competence-damage inducible protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNF2_9FIRM
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
competence/damage-inducible protein cinA
L1_008_000M1_scaffold_2823_55

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57137..59332
DNA (2196bp) protein (732aa)
Competence/damage-inducible protein cinA (Fragment) n=1 Tax=human gut metagenome RepID=K1SQB5_9ZZZZ
Competence/damage-inducible protein cinA {ECO:0000313|EMBL:EKC59763.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Competence-damaged protein.
L1_008_000M1_scaffold_2823_56
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

59601..60773
DNA (1173bp) protein (391aa)
Putative cell division protein FtsW n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ98_9FIRM
Putative cell division protein FtsW {ECO:0000313|EMBL:EFB77258.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cell division protein FtsW
L1_008_000M1_scaffold_2823_57
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60913..62250
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77259.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_008_000M1_scaffold_2823_58
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62259..64700
DNA (2442bp) protein (814aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJA0_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EFB77260.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
erythromycin esterase-like protein
L1_008_000M1_scaffold_2823_59
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

65186..66229
DNA (1044bp) protein (348aa)
ABC transporter substrate binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJA3_9FIRM
ABC transporter substrate binding protein {ECO:0000313|EMBL:EFB77263.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_008_000M1_scaffold_2823_60
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

66400..67317
DNA (918bp) protein (306aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJA4_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFB77264.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
Displaying items 31-60 of 85 in total

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