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L1_008_000M1_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_40_1
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..1126
DNA (1125bp) protein (375aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYS8_9CLOT
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:CDC40960.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Cna protein B-type domain.
L1_008_000M1_scaffold_40_2
unknown

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1180..1389
DNA (210bp) protein (70aa)

This feature has no annotations

L1_008_000M1_scaffold_40_3
unknown

Not on your lists

comp(1821..2429)
DNA (609bp) protein (203aa)

This feature has no annotations

L1_008_000M1_scaffold_40_4
unknown

Not on your lists

2886..3065
DNA (180bp) protein (60aa)

This feature has no annotations

L1_008_000M1_scaffold_40_5
unknown

Not on your lists

comp(3047..3655)
DNA (609bp) protein (203aa)

This feature has no annotations

L1_008_000M1_scaffold_40_6
unknown

Not on your lists

comp(4278..5021)
DNA (744bp) protein (248aa)

This feature has no annotations

L1_008_000M1_scaffold_40_7

Not on your lists

5213..5935
DNA (723bp) protein (241aa)
Polymorphic outer membrane protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VAL8_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGA20875.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
L1_008_000M1_scaffold_40_8
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5952..6266
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRY1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61811.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L1_008_000M1_scaffold_40_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6273..7229
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61810.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L1_008_000M1_scaffold_40_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7242..7526
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKN1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34314.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_40_11
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

7540..8160
DNA (621bp) protein (207aa)
Uncharacterized protein n=2 Tax=Clostridia RepID=K4LDR4_THEPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV10978.1}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
L1_008_000M1_scaffold_40_12
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8147..10039
DNA (1893bp) protein (631aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRX8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61808.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
TraE-like protein
L1_008_000M1_scaffold_40_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10137..13139
DNA (3003bp) protein (1001aa)
Sel1 repeat n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E0L3_9FIRM
Sel1 repeat.
Sel1 repeat {ECO:0000313|EMBL:CBK91384.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_008_000M1_scaffold_40_14
unknown

Not on your lists

13158..13736
DNA (579bp) protein (193aa)

This feature has no annotations

L1_008_000M1_scaffold_40_15
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

13720..14664
DNA (945bp) protein (315aa)
Zinc finger domain-containing protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LFY0_THEPS
CDGSH-type zinc finger protein
Zinc finger domain-containing protein {ECO:0000313|EMBL:AFV10992.1}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
L1_008_000M1_scaffold_40_16
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14661..16466
DNA (1806bp) protein (602aa)
TraG/TraD family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRX1_9CLOT
TraG/TraD family protein {ECO:0000313|EMBL:EDO61801.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
type IV secretion system protein VirD4
L1_008_000M1_scaffold_40_17
unknown

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16551..17126
DNA (576bp) protein (192aa)

This feature has no annotations

L1_008_000M1_scaffold_40_18
unknown

Not on your lists

17128..17724
DNA (597bp) protein (199aa)

This feature has no annotations

L1_008_000M1_scaffold_40_19
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17845..18081
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IBG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61269.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
L1_008_000M1_scaffold_40_20
unknown

Not on your lists

18215..19060
DNA (846bp) protein (282aa)

This feature has no annotations

L1_008_000M1_scaffold_40_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19212..19703)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90023.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L1_008_000M1_scaffold_40_22
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20033..20944
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037885C0
Uncharacterized protein {ECO:0000313|EMBL:CCY68362.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
putative site-specific recombinase
L1_008_000M1_scaffold_40_23
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21830..22552)
DNA (723bp) protein (241aa)
Signal transduction histidine kinase regulating citrate/malate metabolism n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KM14_CLOPH
signal transduction histidine kinase regulating citrate/malate metabolism
Signal transduction histidine kinase regulating citrate/malate metabolism {ECO:0000313|EMBL:ABX41357.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_40_24
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22565..23263)
DNA (699bp) protein (233aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KM13_CLOPH
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ABX41356.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_40_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23956..25137
DNA (1182bp) protein (394aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R7FY47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL71571.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_40_26
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25396..26490
DNA (1095bp) protein (365aa)
Ribosome-binding ATPase YchF n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6A5_9CLOT
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
GTP-binding protein YchF
L1_008_000M1_scaffold_40_27
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26574..28553)
DNA (1980bp) protein (660aa)
ABC transporter permease protein n=2 Tax=Dehalobacter RepID=K4L761_9FIRM
ABC transporter permease protein
ABC transporter permease protein {ECO:0000313|EMBL:AFV06274.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
L1_008_000M1_scaffold_40_28
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28569..29324)
DNA (756bp) protein (252aa)
ABC transporter ATP-binding protein n=1 Tax=Desulfitobacterium sp. PCE1 RepID=UPI00037BA9A4
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AFL98953.1}; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
L1_008_000M1_scaffold_40_29
unknown

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comp(29297..29386)
DNA (90bp) protein (30aa)

This feature has no annotations

L1_008_000M1_scaffold_40_30
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29433..29933)
DNA (501bp) protein (167aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
histidine kinase (EC:2.7.13.3)
Histidine kinase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0X4_9FIRM
Displaying items 1-30 of 184 in total

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