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L1_008_000M1_scaffold_50

Search features with annotation key words

Displaying items 31-60 of 173 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_50_31
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30095..32041)
DNA (1947bp) protein (649aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L662_9FIRM
L1_008_000M1_scaffold_50_32
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32231..33586)
DNA (1356bp) protein (452aa)
Transporter n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSB9_9FIRM
Na+-dependent transporters of the SNF family
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_50_33
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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33913..36093
DNA (2181bp) protein (727aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=2 Tax=Bacteria RepID=R5DNE2_9FIRM
L1_008_000M1_scaffold_50_34
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36090..37166
DNA (1077bp) protein (359aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=2 Tax=root RepID=R5DYP5_9FIRM
6-phosphofructokinase 1 {ECO:0000313|EMBL:CCX81722.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_50_35
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37246..37422
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0G4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81721.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_50_36
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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37422..37823
DNA (402bp) protein (134aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L666_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL15111.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_50_37
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37981..38517
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0G0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81716.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_50_38
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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38527..39513
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
tRNA-dihydrouridine synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L668_9FIRM
tRNA-U20-dihydrouridine synthase
L1_008_000M1_scaffold_50_39
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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39572..40828
DNA (1257bp) protein (419aa)
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Serine hydroxymethyltransferase n=2 Tax=Ruminococcus RepID=D4L669_9FIRM
L1_008_000M1_scaffold_50_40
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41251..41439)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DYN6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15115.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_50_41
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41547..41888
DNA (342bp) protein (114aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E0F6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15116.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_50_42
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42016..42564)
DNA (549bp) protein (183aa)
Membrane-associated phospholipid phosphatase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DN80_9FIRM
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:CCX81710.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Membrane-associated phospholipid phosphatase
L1_008_000M1_scaffold_50_43
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42707..43717)
DNA (1011bp) protein (337aa)
Stage V sporulation protein AD (SpoVAD) n=2 Tax=root RepID=R5DSA5_9FIRM
Stage V sporulation protein AD (SpoVAD) {ECO:0000313|EMBL:CCX81709.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Stage V sporulation protein AD (SpoVAD).
L1_008_000M1_scaffold_50_44
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43791..45494)
DNA (1704bp) protein (568aa)
Uncharacterized vancomycin resistance protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNC8_9FIRM
Uncharacterized vancomycin resistance protein {ECO:0000313|EMBL:CCX81708.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Uncharacterized vancomycin resistance protein
L1_008_000M1_scaffold_50_45
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45960..47102
DNA (1143bp) protein (381aa)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase (EC:2.4.1.157)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYN2_9FIRM
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase {ECO:0000313|EMBL:CCX81707.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_50_46
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47099..48448
DNA (1350bp) protein (450aa)
Serine protease inhibitor n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0F2_9FIRM
Serine protease inhibitor {ECO:0000313|EMBL:CCX81706.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Serine protease inhibitor
L1_008_000M1_scaffold_50_47
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

48735..50189
DNA (1455bp) protein (485aa)
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000313|EMBL:CBL15122.1};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamate--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L677_9FIRM
L1_008_000M1_scaffold_50_48
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50215..51906
DNA (1692bp) protein (564aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L678_9FIRM
L1_008_000M1_scaffold_50_49
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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52012..52818
DNA (807bp) protein (269aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL15124.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBL15124.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L679_9FIRM
L1_008_000M1_scaffold_50_50
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52896..54365)
DNA (1470bp) protein (490aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS94_9FIRM
L1_008_000M1_scaffold_50_51
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54887..56224
DNA (1338bp) protein (446aa)
Maltose-binding periplasmic proteins/domains n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYM3_9FIRM
Maltose-binding periplasmic proteins/domains {ECO:0000313|EMBL:CCX81697.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Maltose-binding periplasmic proteins/domains
L1_008_000M1_scaffold_50_52
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56475..57974
DNA (1500bp) protein (500aa)
ABC-type sugar transport systems permease components n=3 Tax=root RepID=R5DS89_9FIRM
ABC-type sugar transport systems permease components {ECO:0000313|EMBL:CCX81694.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type sugar transport systems, permease components
L1_008_000M1_scaffold_50_53
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

57971..58834
DNA (864bp) protein (288aa)
ABC-type maltose transport systems permease component n=2 Tax=root RepID=R5DNB4_9FIRM
ABC-type maltose transport systems permease component {ECO:0000313|EMBL:CCX81693.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type maltose transport systems, permease component
L1_008_000M1_scaffold_50_54
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58905..60560
DNA (1656bp) protein (552aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Glycosidases (EC:3.2.1.1)
Glycosidases n=2 Tax=root RepID=R5DYL9_9FIRM
L1_008_000M1_scaffold_50_55
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


61263..61682
DNA (420bp) protein (140aa)
30S ribosomal protein S12 n=2 Tax=Ruminococcus RepID=D4L685_9FIRM
SSU ribosomal protein S12P
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_50_56
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


61840..62310
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=root RepID=R5DS85_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
rpsG; 30S ribosomal protein S7
L1_008_000M1_scaffold_50_57
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62342..64441
DNA (2100bp) protein (700aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Elongation factor G n=3 Tax=root RepID=D4L686_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_50_58
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

64557..65759
DNA (1203bp) protein (401aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Ruminococcus RepID=D4L687_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_50_59
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

66561..67325
DNA (765bp) protein (255aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QCA4_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCZ19871.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_50_60
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67393..67848)
DNA (456bp) protein (152aa)
Stage V sporulation protein AC n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNA4_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CCX81683.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
stage V sporulation protein AC
Displaying items 31-60 of 173 in total

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