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L1_008_000M1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_56_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(338..3877)
DNA (3540bp) protein (1180aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5Q6_9FIRM
pyruvate ferredoxin/flavodoxin oxidoreductase
L1_008_000M1_scaffold_56_2
unknown

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4585..4761
DNA (177bp) protein (59aa)

This feature has no annotations

L1_008_000M1_scaffold_56_3
unknown

Not on your lists

4751..5191
DNA (441bp) protein (147aa)

This feature has no annotations

L1_008_000M1_scaffold_56_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5063..7477)
DNA (2415bp) protein (805aa)
Homocysteine S-methyltransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV36_9FIRM
Homocysteine S-methyltransferase {ECO:0000313|EMBL:CCX84095.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
homocysteine S-methyltransferase
L1_008_000M1_scaffold_56_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7455..8099)
DNA (645bp) protein (215aa)
Vitamin B12 dependent methionine synthase, activation domain. (EC:2.1.1.13)
Vitamin B12 dependent methionine synthase, activation domain {ECO:0000313|EMBL:CBL15074.1}; EC=2.1.1.13 {ECO:0000313|EMBL:CBL15074.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Vitamin B12 dependent methionine synthase, activation domain n=2 Tax=Ruminococcus RepID=D4L629_9FIRM
L1_008_000M1_scaffold_56_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8096..8956)
DNA (861bp) protein (287aa)
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862, ECO:0000313|EMBL:CBL15073.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Methylenetetrahydrofolate reductase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L628_9FIRM
L1_008_000M1_scaffold_56_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9648..11018)
DNA (1371bp) protein (457aa)
Mg2+ transporter (MgtE) n=2 Tax=Ruminococcus RepID=D4L627_9FIRM
Mg2+ transporter (mgtE)
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_56_8
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(11429..13117)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YBP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12541.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Restriction endonuclease , AlwI
L1_008_000M1_scaffold_56_9
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(13128..13976)
DNA (849bp) protein (283aa)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
DNA adenine methylase (EC:2.1.1.72)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZDQ6_9FIRM
L1_008_000M1_scaffold_56_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14215..14856
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7J7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84101.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15363..16202)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5R5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84102.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16400..17239)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84103.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_13
unknown

Not on your lists

comp(17276..17434)
DNA (159bp) protein (53aa)

This feature has no annotations

L1_008_000M1_scaffold_56_14
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17650..18438)
DNA (789bp) protein (263aa)
LPXTG-site transpeptidase (Sortase) family protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L624_9FIRM
LPXTG-site transpeptidase (sortase) family protein
LPXTG-site transpeptidase (Sortase) family protein {ECO:0000313|EMBL:CBL15069.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_56_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18431..19375)
DNA (945bp) protein (315aa)
LPXTG-site transpeptidase (Sortase) family protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV45_9FIRM
LPXTG-site transpeptidase (Sortase) family protein {ECO:0000313|EMBL:CCX84105.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
LPXTG-site transpeptidase (sortase) family protein
L1_008_000M1_scaffold_56_16
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19575..20303)
DNA (729bp) protein (243aa)
Cna protein B-type domain n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L622_9FIRM
Cna protein B-type domain.
Cna protein B-type domain {ECO:0000313|EMBL:CBL15067.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_56_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20849..21001)
DNA (153bp) protein (51aa)
Cna protein B-type domain n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L622_9FIRM
Cna protein B-type domain.
Cna protein B-type domain {ECO:0000313|EMBL:CBL15067.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_56_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21190..25656)
DNA (4467bp) protein (1489aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5R9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84107.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26310..29177)
DNA (2868bp) protein (956aa)
Protein translocase subunit SecA n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVE4_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
protein translocase subunit secA
L1_008_000M1_scaffold_56_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29245..30642)
DNA (1398bp) protein (466aa)
Penicillin-binding protein transpeptidase domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV50_9FIRM
Penicillin-binding protein transpeptidase domain protein {ECO:0000313|EMBL:CCX84110.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30811..32508)
DNA (1698bp) protein (566aa)
FHA domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5S3_9FIRM
FHA domain protein {ECO:0000313|EMBL:CCX84112.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33013..33552
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84113.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33608..33970)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84115.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33996..34544)
DNA (549bp) protein (183aa)
Uncharacterized conserved protein n=2 Tax=Ruminococcus RepID=D4L619_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL15064.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_56_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34815..35717)
DNA (903bp) protein (301aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84119.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_56_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36336..38075
DNA (1740bp) protein (580aa)
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV58_9FIRM
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain {ECO:0000313|EMBL:CCX84120.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_008_000M1_scaffold_56_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38280..39077)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7L5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84121.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39221..40564)
DNA (1344bp) protein (448aa)
Uncharacterized protein conserved in bacteria n=4 Tax=root RepID=D4L616_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCX84122.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_56_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40564..43467)
DNA (2904bp) protein (968aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVF5_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:CCX84123.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_56_30

Not on your lists

comp(43753..44406)
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=root RepID=R5DZ03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKC61686.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
Displaying items 1-30 of 188 in total

View Taxonomy