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L1_008_000M1_scaffold_58

Search features with annotation key words

Displaying items 1-30 of 193 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_58_1
unknown

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2..79
DNA (78bp) protein (26aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8E0_9FIRM
L1_008_000M1_scaffold_58_2
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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259..726
DNA (468bp) protein (156aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BD83_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EDM64400.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L1_008_000M1_scaffold_58_3
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1007..2689
DNA (1683bp) protein (561aa)
Na/Pi-cotransporter II-like protein n=2 Tax=Dorea RepID=A6BD84_9FIRM
Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EDM64401.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Na/Pi-cotransporter
L1_008_000M1_scaffold_58_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2925..3356
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FWT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE19156.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L1_008_000M1_scaffold_58_5
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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3480..4085
DNA (606bp) protein (202aa)
Transcriptional regulator, GntR family n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BD86_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EDM64403.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
putative transcription regulator
L1_008_000M1_scaffold_58_6
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4082..4726
DNA (645bp) protein (215aa)
FCD domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BD87_9FIRM
FCD domain protein {ECO:0000313|EMBL:EDM64404.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
transcriptional regulator, GntR family
L1_008_000M1_scaffold_58_7
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5030..5596
DNA (567bp) protein (189aa)
Transporter, DASS family n=2 Tax=Dorea RepID=A6BD88_9FIRM
Transporter, DASS family {ECO:0000313|EMBL:EDM64405.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
anion transporter
L1_008_000M1_scaffold_58_8
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5541..6263
DNA (723bp) protein (241aa)
Transporter, DASS family n=2 Tax=Dorea RepID=A6BD88_9FIRM
Transporter DASS family {ECO:0000313|EMBL:CDE19138.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
anion transporter
L1_008_000M1_scaffold_58_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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6434..7333
DNA (900bp) protein (300aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.32)
Tartrate dehydratase subunit alpha n=2 Tax=Dorea RepID=A6BD89_9FIRM
Tartrate dehydratase subunit alpha {ECO:0000313|EMBL:CDE19133.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L1_008_000M1_scaffold_58_10
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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7333..7959
DNA (627bp) protein (209aa)
L(+)-tartrate dehydratase subunit beta {ECO:0000313|EMBL:EDM64407.1}; EC=4.2.1.32 {ECO:0000313|EMBL:EDM64407.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L(+)-tartrate dehydratase subunit beta n=2 Tax=Dorea RepID=A6BD90_9FIRM
L(+)-tartrate dehydratase subunit beta
L1_008_000M1_scaffold_58_11
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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8169..9362
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BD91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64408.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L1_008_000M1_scaffold_58_12
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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9579..10760
DNA (1182bp) protein (394aa)
Transporter CPA2 family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FWQ4_9FIRM
Transporter CPA2 family {ECO:0000313|EMBL:CDE19126.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
sodium/proton antiporter, CPA1 family (TC 2.A.36)
L1_008_000M1_scaffold_58_13
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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10811..11356
DNA (546bp) protein (182aa)
HDIG domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BD94_9FIRM
HDIG domain protein {ECO:0000313|EMBL:EDM64411.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
uncharacterized domain HDIG
L1_008_000M1_scaffold_58_14
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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11481..11915
DNA (435bp) protein (145aa)
Transcriptional regulator Rrf2 family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FZJ3_9FIRM
Transcriptional regulator Rrf2 family {ECO:0000313|EMBL:CDE19122.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator, BadM/Rrf2 family
L1_008_000M1_scaffold_58_15
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12060..12170)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7IV34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE55198.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
L1_008_000M1_scaffold_58_16
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12410..12838)
DNA (429bp) protein (143aa)
Transposase DDE domain-containing protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VG44_9FIRM
Putative transposase, IS4 family {ECO:0000313|EMBL:EEG91936.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Transposase domain (DUF772).
L1_008_000M1_scaffold_58_17
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13024..13569)
DNA (546bp) protein (182aa)
Transposase DDE domain-containing protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VG44_9FIRM
Transposase DDE domain-containing protein {ECO:0000313|EMBL:EFV18170.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Transposase domain (DUF772).
L1_008_000M1_scaffold_58_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13660..14352)
DNA (693bp) protein (231aa)
DNA-binding helix-turn-helix protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G260_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDE21031.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
helix-turn-helix domain-containing protein
L1_008_000M1_scaffold_58_19
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

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comp(14667..15695)
DNA (1029bp) protein (343aa)
Transposase IS4 family protein n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N176_9FIRM
Transposase IS4 family protein {ECO:0000313|EMBL:CDF06296.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
transposase IS4 family protein
L1_008_000M1_scaffold_58_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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16031..17305
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G2P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE21028.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
major facilitator superfamily transporter
L1_008_000M1_scaffold_58_21
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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17329..19377
DNA (2049bp) protein (683aa)
Hydrolase CocE/NonD family protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G4S9_9FIRM
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:CDE21027.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
peptidase S15
L1_008_000M1_scaffold_58_22
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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19393..20805
DNA (1413bp) protein (471aa)
Amino acid permease n=1 Tax=Dorea longicatena CAG:42 RepID=R7G256_9FIRM
Amino acid permease {ECO:0000313|EMBL:CDE21026.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
amino acid/polyamine/organocation transporter
L1_008_000M1_scaffold_58_23
unknown

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20802..20927
DNA (126bp) protein (42aa)

This feature has no annotations

L1_008_000M1_scaffold_58_24
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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20986..21861
DNA (876bp) protein (292aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
pyridoxal phosphate synthase yaaD subunit (EC:4.-.-.-)
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Dorea longicatena CAG:42 RepID=R7G1I3_9FIRM
L1_008_000M1_scaffold_58_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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21863..22444
DNA (582bp) protein (194aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC:2.4.2.-)
Glutamine amidotransferase subunit PdxT n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0M5_9FIRM
L1_008_000M1_scaffold_58_26
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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22616..22975
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G248_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE21016.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
putative glutathione S-transferase
L1_008_000M1_scaffold_58_27
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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23155..23538
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BDA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE21015.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L1_008_000M1_scaffold_58_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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23843..24775
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A n=2 Tax=Dorea RepID=A6BDA8_9FIRM
L1_008_000M1_scaffold_58_29
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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24854..26164
DNA (1311bp) protein (437aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=2 Tax=Dorea RepID=A6BDA9_9FIRM
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:CDE21013.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L1_008_000M1_scaffold_58_30
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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26193..26639
DNA (447bp) protein (149aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDB0_9FIRM
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EDM64427.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
rrf2 family protein, putative transcriptional regulator
Displaying items 1-30 of 193 in total

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