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L1_008_000M1_scaffold_103

Search features with annotation key words

Displaying items 1-30 of 203 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_103_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..418)
DNA (417bp) protein (139aa)
DNA (Cytosine-5-)-methyltransferase {ECO:0000313|EMBL:EEG31016.1}; EC=2.1.1.37 {ECO:0000313|EMBL:EEG31016.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
DNA-cytosine methyltransferase (EC:2.1.1.37)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBV5_9CLOT
L1_008_000M1_scaffold_103_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(616..1017)
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8G8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15913.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_103_3
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1007..1336)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXA1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60398.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
transcriptional regulator
L1_008_000M1_scaffold_103_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1333..1911)
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8G7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15912.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_103_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1874..2176)
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8G7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15912.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_103_6
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2294..2770)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60692.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L1_008_000M1_scaffold_103_7
Lactobacillus ruminis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(2770..3279)
DNA (510bp) protein (170aa)
Transcriptional regulator n=1 Tax=Lactobacillus ruminis (strain ATCC 27782 / RF3) RepID=G2SMX9_LACRR
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEN79165.1}; TaxID=1069534 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus ruminis (strain ATCC 27782 / RF3).;"
L1_008_000M1_scaffold_103_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3393..4439)
DNA (1047bp) protein (349aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8G5_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL15910.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_103_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4576..5259)
DNA (684bp) protein (228aa)
Antirestriction protein (ArdA) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8G2_9FIRM
Antirestriction protein (ArdA).
Antirestriction protein (ArdA) {ECO:0000313|EMBL:CBL15907.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_103_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5256..5591)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8F9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15904.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_103_11

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comp(5796..6710)
DNA (915bp) protein (305aa)
ParB-like partition protein n=1 Tax=gut metagenome RepID=J9GVB5_9ZZZZ
ParB-like partition protein {ECO:0000313|EMBL:EJX04475.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
ParB-like partition proteins
L1_008_000M1_scaffold_103_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6694..6864)
DNA (171bp) protein (57aa)
ATPases involved in chromosome partitioning n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8F5_9FIRM
ATPases involved in chromosome partitioning
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CBL15900.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_103_13
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7129..7689
DNA (561bp) protein (187aa)
Manganese containing catalase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYK0_9CLOT
Manganese containing catalase {ECO:0000313|EMBL:CDC38014.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
manganese containing catalase
L1_008_000M1_scaffold_103_14
Clostridium sp. CAG:567, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8026..9219
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:567 RepID=R7M6Z8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE96819.1}; TaxID=1262820 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:567.;"
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
L1_008_000M1_scaffold_103_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9221..11866
DNA (2646bp) protein (882aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1B1M3_9FIRM
Glycosyl transferase family 2 {ECO:0000313|EMBL:KGJ54713.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
L1_008_000M1_scaffold_103_16
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11870..12301
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BI26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC32864.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
GNAT family acetyltransferase
L1_008_000M1_scaffold_103_17
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(12453..12935)
DNA (483bp) protein (161aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Firmicutes RepID=R6PV40_9FIRM
ybaK/ebsC protein
L1_008_000M1_scaffold_103_18
BJP_IG2103_SUB10_Tenericutes_35_49, Mollicutes, Tenericutes, Bacteria

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comp(12932..13528)
DNA (597bp) protein (199aa)
Uncharacterized protein n=2 Tax=Paenibacillus RepID=F5LJ83_9BACL
Tax=BJP_IG2103_SUB10_Tenericutes_35_49
L1_008_000M1_scaffold_103_19
unknown

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13694..13849
DNA (156bp) protein (52aa)

This feature has no annotations

L1_008_000M1_scaffold_103_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13929..15344)
DNA (1416bp) protein (472aa)
sulfide dehydrogenase (flavoprotein) subunit SudA (EC:1.97.-.- 1.4.1.13 1.4.1.14)
Sulfide dehydrogenase (Flavoprotein) subunit SudA {ECO:0000313|EMBL:CBL14839.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBL14839.1};; EC=1.4.1.14 {ECO:0000313|EMBL:CBL14839.1};; EC=1.97.-.- {ECO:0000313|EMBL:CBL14839.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Sulfide dehydrogenase (Flavoprotein) subunit SudA n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5E4_9FIRM
L1_008_000M1_scaffold_103_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15347..16189)
DNA (843bp) protein (281aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.18.1.2 1.97.-.-)
Sulfide dehydrogenase (Flavoprotein) subunit SudB n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1Z4_9FIRM
Sulfide dehydrogenase (Flavoprotein) subunit SudB {ECO:0000313|EMBL:CCX82837.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_103_22
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(16453..17670)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U5F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC77289.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Alcohol dehydrogenase, class IV
L1_008_000M1_scaffold_103_23
unknown

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comp(17934..18737)
DNA (804bp) protein (268aa)

This feature has no annotations

L1_008_000M1_scaffold_103_24
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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18935..19645
DNA (711bp) protein (237aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YFU6_9FIRM
L1_008_000M1_scaffold_103_25
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19729..20283
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A2N1_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
ribosome recycling factor
L1_008_000M1_scaffold_103_26
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

20303..21034
DNA (732bp) protein (244aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZIC9_9FIRM
L1_008_000M1_scaffold_103_27
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21116..21937
DNA (822bp) protein (274aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Phosphatidate cytidylyltransferase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5ACJ0_9CLOT
phosphatidate cytidylyltransferase
L1_008_000M1_scaffold_103_28
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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21954..23129
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=root RepID=R7BDZ4_9FIRM
L1_008_000M1_scaffold_103_29
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23126..24217
DNA (1092bp) protein (364aa)
Peptidase, M50 family {ECO:0000313|EMBL:EJF42483.1}; EC=3.4.24.- {ECO:0000313|EMBL:EJF42483.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
peptidase M50 n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037AA412
membrane-associated zinc metalloprotease
L1_008_000M1_scaffold_103_30
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

24234..25277
DNA (1044bp) protein (348aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y2B7_9FIRM
Displaying items 1-30 of 203 in total

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