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L1_008_000M1_scaffold_116

Search features with annotation key words

Displaying items 31-60 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_116_31
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35585..36748)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R3Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF45642.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L1_008_000M1_scaffold_116_32
unknown

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comp(36944..37060)
DNA (117bp) protein (39aa)

This feature has no annotations

L1_008_000M1_scaffold_116_33
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37874..38740)
DNA (867bp) protein (289aa)
ThiF family protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NGP4_9FIRM
ThiF family protein {ECO:0000313|EMBL:CCZ03340.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1
L1_008_000M1_scaffold_116_34
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38706..40463)
DNA (1758bp) protein (586aa)
ABC transporter ATP-binding/permease protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NHX7_9FIRM
ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:CDC10790.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_116_35
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40463..42211)
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NWZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC10786.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
ATP-binding cassette subfamily C protein
L1_008_000M1_scaffold_116_36
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42344..43363
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IJP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS22003.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L1_008_000M1_scaffold_116_37
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43379..46033)
DNA (2655bp) protein (885aa)
Sensory box/GGDEF family protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6PMK7_9FIRM
Sensory box/GGDEF family protein {ECO:0000313|EMBL:CDC10987.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
diguanylate cyclase (GGDEF) domain
L1_008_000M1_scaffold_116_38
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(46049..47530)
DNA (1482bp) protein (494aa)
RNA methylase n=1 Tax=Roseburia sp. CAG:182 RepID=R7QXW7_9FIRM
RNA methylase {ECO:0000313|EMBL:CDF42160.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Putative RNA methylase family UPF0020.
L1_008_000M1_scaffold_116_39
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47599..48348)
DNA (750bp) protein (250aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Roseburia sp. CAG:45 RepID=R6NXL1_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDC10981.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
N-acetylmuramoyl-L-alanine amidase
L1_008_000M1_scaffold_116_40
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(48383..49597)
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I495_9FIRM
L1_008_000M1_scaffold_116_41
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49639..50472)
DNA (834bp) protein (278aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FQ43_9FIRM
L1_008_000M1_scaffold_116_42
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50490..51035)
DNA (546bp) protein (182aa)
Putative ANTAR domain protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QY68_9FIRM
Putative ANTAR domain protein {ECO:0000313|EMBL:CDF43174.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_116_43
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51084..52415)
DNA (1332bp) protein (444aa)
glutamine synthetase, type I (EC:6.3.1.2)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QZT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF43173.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
L1_008_000M1_scaffold_116_44
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52408..53202)
DNA (795bp) protein (265aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase {ECO:0000313|EMBL:EEV01246.1}; EC=5.3.1.16 {ECO:0000313|EMBL:EEV01246.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAD9_9FIRM
L1_008_000M1_scaffold_116_45
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

53384..54838
DNA (1455bp) protein (485aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J2X1_9FIRM
inosine-5'-monophosphate dehydrogenase
L1_008_000M1_scaffold_116_46
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54929..55354)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z7A7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24702.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000M1_scaffold_116_47
Treponema succinifaciens, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(55420..55803)
DNA (384bp) protein (128aa)
Response regulator receiver protein n=1 Tax=Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091) RepID=F2NRM5_TRES6
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:AEB13843.1}; TaxID=869209 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091).;"
L1_008_000M1_scaffold_116_48
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55880..56236)
DNA (357bp) protein (119aa)
Stage V sporulation protein AE n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FPD2_9FIRM
Stage V sporulation protein AE {ECO:0000313|EMBL:EEG95567.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
stage V sporulation protein AE
L1_008_000M1_scaffold_116_49
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(56279..57307)
DNA (1029bp) protein (343aa)
Stage V sporulation protein AD n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9K7X9_9FIRM
Stage V sporulation protein AD {ECO:0000313|EMBL:EOS42560.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
stage V sporulation protein AD
L1_008_000M1_scaffold_116_50
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(57378..58517)
DNA (1140bp) protein (380aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) n=2 Tax=Roseburia intestinalis RepID=D4KMD1_9FIRM
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) {ECO:0000313|EMBL:CBL08033.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_116_51
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58537..58878)
DNA (342bp) protein (114aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0M4_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDE69388.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_116_52
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(59181..60287)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J955_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT23531.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_116_53
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(60461..60985)
DNA (525bp) protein (175aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RBL5_9FIRM
L1_008_000M1_scaffold_116_54
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

61153..62394
DNA (1242bp) protein (414aa)
Iron-only hydrogenase maturation protein HydF n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q2D0_9FIRM
iron-only hydrogenase maturation protein HydF
Tax=BJP_IG2069_Clostridiales_42_11
L1_008_000M1_scaffold_116_55
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62391..62825
DNA (435bp) protein (145aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
aspartate ammonia-lyase n=1 Tax=Treponema primitia RepID=UPI0002555816
Tax=BJP_IG2069_Clostridiales_42_11
L1_008_000M1_scaffold_116_56
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62987..63337)
DNA (351bp) protein (117aa)
Cupin domain n=1 Tax=Roseburia sp. CAG:45 RepID=R6NHA3_9FIRM
Cupin domain {ECO:0000313|EMBL:CDC11508.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
Cupin domain.
L1_008_000M1_scaffold_116_57
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63366..65084)
DNA (1719bp) protein (573aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9INF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS23440.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_116_58
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65230..65727)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:590 RepID=R5EDH7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX89344.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
CarD-like/TRCF domain.
L1_008_000M1_scaffold_116_59
unknown

Not on your lists

comp(66181..66318)
DNA (138bp) protein (46aa)

This feature has no annotations

L1_008_000M1_scaffold_116_60
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(66315..66893)
DNA (579bp) protein (193aa)
Accessory gene regulator n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FHU2_9FIRM
Accessory gene regulator {ECO:0000313|EMBL:CDE13227.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
accessory gene regulator
Displaying items 31-60 of 121 in total

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