ggKbase home page

L1_008_000M1_scaffold_116

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_116_1
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(135..548)
DNA (414bp) protein (138aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NPZ4_9FIRM
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CCZ04199.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L1_008_000M1_scaffold_116_2
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(545..1408)
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FXQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG92672.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L1_008_000M1_scaffold_116_3
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1540..6171)
DNA (4632bp) protein (1544aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NG72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11118.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_116_4
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6186..7745)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NIW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11115.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
prepilin-type N-terminal cleavage/methylation domain
L1_008_000M1_scaffold_116_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7700..8257)
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GR95_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA92719.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L1_008_000M1_scaffold_116_6
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8269..10461)
DNA (2193bp) protein (731aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NG65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11108.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_116_7
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10470..11540)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NXW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11106.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_116_8
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11590..12330)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NRU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11104.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_116_9
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12352..14013)
DNA (1662bp) protein (554aa)
Type IV pilus assembly protein PilM n=1 Tax=Roseburia sp. CAG:45 RepID=R6NG60_9FIRM
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:CDC11103.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
type IV pilus assembly protein PilM
L1_008_000M1_scaffold_116_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14094..14849)
DNA (756bp) protein (252aa)
type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A {ECO:0000313|EMBL:CBK90809.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBK90809.1};; EC=3.4.23.43 {ECO:0000313|EMBL:CBK90809.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E5W9_9FIRM
L1_008_000M1_scaffold_116_11
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14881..15306)
DNA (426bp) protein (142aa)
Prepilin-type cleavage/methylation protein n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Y981_9FIRM
Prepilin-type cleavage/methylation protein {ECO:0000313|EMBL:ESL04652.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
prepilin-type N-terminal cleavage/methylation domain
L1_008_000M1_scaffold_116_12
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15398..16612)
DNA (1215bp) protein (405aa)
Type II secretion system protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NRU2_9FIRM
Type II secretion system protein {ECO:0000313|EMBL:CDC11099.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
type II secretion system protein
L1_008_000M1_scaffold_116_13
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16631..17689)
DNA (1059bp) protein (353aa)
Twitching motility protein n=1 Tax=Catonella morbi ATCC 51271 RepID=V2ZCK2_9FIRM
Twitching motility protein {ECO:0000313|EMBL:ESL04650.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
pilus retraction protein PilT
L1_008_000M1_scaffold_116_14
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17704..19398)
DNA (1695bp) protein (565aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NRR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11054.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
type II secretion system protein E (GspE)
L1_008_000M1_scaffold_116_15
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20137..21795)
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9ISP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS21997.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
uridine kinase
L1_008_000M1_scaffold_116_16
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21829..22611)
DNA (783bp) protein (261aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Dorea RepID=A6BEL0_9FIRM
conserved hypothetical protein TIGR00486
L1_008_000M1_scaffold_116_17
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22653..23402)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T139_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN96108.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_116_18
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23404..24543)
DNA (1140bp) protein (380aa)
RNA polymerase sigma factor SigA n=1 Tax=Roseburia sp. CAG:45 RepID=R6NIQ6_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
RpoD family RNA polymerase sigma factor
L1_008_000M1_scaffold_116_19
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24576..26348)
DNA (1773bp) protein (591aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Roseburia sp. CAG:45 RepID=R6NG12_9FIRM
L1_008_000M1_scaffold_116_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26373..27380)
DNA (1008bp) protein (336aa)
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase, putative n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS91_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_116_21
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28257..28553)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J1V0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT21713.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
putative membrane protein
L1_008_000M1_scaffold_116_22
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28555..29109)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IWK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26315.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L1_008_000M1_scaffold_116_23
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29109..29594)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IWP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26314.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
L1_008_000M1_scaffold_116_24
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29591..29980)
DNA (390bp) protein (130aa)
RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IWU5_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_116_25
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

comp(30267..30524)
DNA (258bp) protein (86aa)
Copper chaperone n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N5X8_9FIRM
Copper chaperone {ECO:0000313|EMBL:CDF07467.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
Copper chaperone
L1_008_000M1_scaffold_116_26
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

comp(30556..32814)
DNA (2259bp) protein (753aa)
copper-(or silver)-translocating P-type ATPase (EC:3.6.3.4)
Cation transport ATPase n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N4I3_9FIRM
Cation transport ATPase {ECO:0000313|EMBL:CDF07466.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
L1_008_000M1_scaffold_116_27
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

comp(32828..33136)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N3Q0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF07465.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
hypothetical protein
L1_008_000M1_scaffold_116_28
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33445..34623)
DNA (1179bp) protein (393aa)
Predicted oxidoreductases of the aldo/keto reductase family n=1 Tax=Roseburia sp. CAG:45 RepID=R6NG08_9FIRM
Predicted oxidoreductases of the aldo/keto reductase family {ECO:0000313|EMBL:CDC11038.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
putative oxidoreductase of aldo/keto reductase family
L1_008_000M1_scaffold_116_29
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34633..35460)
DNA (828bp) protein (276aa)
4Fe-4S binding domain n=1 Tax=Clostridium sp. CAG:81 RepID=R5GA32_9CLOT
4Fe-4S binding domain.
4Fe-4S binding domain {ECO:0000313|EMBL:CBL42690.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L1_008_000M1_scaffold_116_30
unknown

Not on your lists

comp(35457..35588)
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying items 1-30 of 121 in total

View Taxonomy