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L1_008_000M1_scaffold_125

Search features with annotation key words

Displaying items 31-60 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_125_31
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21473..22630
DNA (1158bp) protein (386aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NZ69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC13734.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
L1_008_000M1_scaffold_125_32
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22662..23840
DNA (1179bp) protein (393aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Probable tRNA sulfurtransferase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KN27_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L1_008_000M1_scaffold_125_33
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23889..24122)
DNA (234bp) protein (78aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FQM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29029.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L1_008_000M1_scaffold_125_34
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24221..25531
DNA (1311bp) protein (437aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD45_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EEV00268.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_125_35
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25604..25867
DNA (264bp) protein (88aa)
UPF0297 protein BN520_00410 n=1 Tax=Roseburia sp. CAG:182 RepID=R7R1V0_9FIRM
UPF0297 protein BN520_00410 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_125_36
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25880..26302
DNA (423bp) protein (141aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Putative Holliday junction resolvase n=1 Tax=Roseburia sp. CAG:182 RepID=R7QYN5_9FIRM
conserved hypothetical protein TIGR00250
L1_008_000M1_scaffold_125_37
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26352..26618
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7R184_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF43698.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Protein of unknown function (DUF1292).
L1_008_000M1_scaffold_125_38
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26767..28434
DNA (1668bp) protein (556aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GD41_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEV00264.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_125_39
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28436..28795
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2BI27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ36464.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
Protein of unknown function (DUF964).
L1_008_000M1_scaffold_125_40
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28802..29455
DNA (654bp) protein (218aa)
O-methyltransferase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQN5_9FIRM
O-methyltransferase {ECO:0000313|EMBL:EEG95104.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
O-methyltransferase
L1_008_000M1_scaffold_125_41
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29452..30681
DNA (1230bp) protein (410aa)
Peptidase U32 n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T2J6_ROSHA
peptidase U32
Peptidase U32 {ECO:0000313|EMBL:AEN96219.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_125_42
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30687..31739
DNA (1053bp) protein (351aa)
3-carboxymuconate cyclase (EC:3.1.1.31)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6PVD7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC13722.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
L1_008_000M1_scaffold_125_43
unknown

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31841..31933
DNA (93bp) protein (31aa)

This feature has no annotations

L1_008_000M1_scaffold_125_44
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32630..34462)
DNA (1833bp) protein (611aa)
GTP-binding protein TypA/BipA n=1 Tax=Eubacterium sp. 14-2 RepID=S0J1Z0_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EOT21748.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
GTP-binding protein TypA/BipA
L1_008_000M1_scaffold_125_45
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34663..35289
DNA (627bp) protein (209aa)
Single-stranded DNA-binding protein n=3 Tax=Roseburia intestinalis RepID=D4KNP1_9FIRM
Single-stranded DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000313|EMBL:CBL11303.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_125_46
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35378..35863
DNA (486bp) protein (162aa)
ATP:corrinoid adenosyltransferase (EC:2.5.1.17)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79113.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_008_000M1_scaffold_125_47
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36230..37117
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Roseburia sp. CAG:182 RepID=R7QX75_9FIRM
L1_008_000M1_scaffold_125_48
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37164..37931
DNA (768bp) protein (256aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRV0_9FIRM
L1_008_000M1_scaffold_125_49
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37949..39904
DNA (1956bp) protein (652aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Eubacterium sp. 14-2 RepID=S0J1W1_9FIRM
fructose-1,6-bisphosphatase
L1_008_000M1_scaffold_125_50
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


40028..40381
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=2 Tax=Clostridiales RepID=R5TGL5_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
rplS; 50S ribosomal protein L19
L1_008_000M1_scaffold_125_51
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40759..41349
DNA (591bp) protein (197aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
Signal peptidase I n=1 Tax=Roseburia sp. CAG:45 RepID=R6NVY7_9FIRM
signal peptidase I
L1_008_000M1_scaffold_125_52
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41360..42211
DNA (852bp) protein (284aa)
Ribosome biogenesis GTPase A n=1 Tax=Roseburia sp. CAG:45 RepID=R6NMT5_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
ribosome biogenesis GTP-binding protein YlqF
L1_008_000M1_scaffold_125_53
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42273..42842
DNA (570bp) protein (190aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=2 Tax=Eubacterium sp. 14-2 RepID=S0J5Z6_9FIRM
L1_008_000M1_scaffold_125_54
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42852..43613
DNA (762bp) protein (254aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Roseburia sp. CAG:182 RepID=R7QXZ8_9FIRM
L1_008_000M1_scaffold_125_55
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43625..45388
DNA (1764bp) protein (588aa)
Flagellar hook-length control protein FliK n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y9X7_9FIRM
Flagellar hook-length control protein FliK {ECO:0000313|EMBL:CDA24298.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000M1_scaffold_125_56
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45391..45675
DNA (285bp) protein (95aa)
Flagellar biosynthesis n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL92_9FIRM
Flagellar biosynthesis {ECO:0000313|EMBL:CCZ79043.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB
L1_008_000M1_scaffold_125_57
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45685..46038
DNA (354bp) protein (118aa)
UPF0102 protein ROSINTL182_09024 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGF6_9FIRM
UPF0102 protein ROSINTL182_09024 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000M1_scaffold_125_58
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46072..46926
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGF5_9FIRM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000M1_scaffold_125_59
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47047..47421
DNA (375bp) protein (125aa)
Transcriptional regulator, GntR family n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMZ1_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG96056.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
transcriptional regulator, GntR family
L1_008_000M1_scaffold_125_60
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47418..48317
DNA (900bp) protein (300aa)
ABC-type multidrug transport system ATPase component n=1 Tax=Roseburia sp. CAG:182 RepID=R7R173_9FIRM
ABC-type multidrug transport system ATPase component {ECO:0000313|EMBL:CDF43683.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
ABC transporter ATP binding protein
Displaying items 31-60 of 126 in total

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