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L1_008_000M1_scaffold_162

Search features with annotation key words

Displaying items 31-60 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_162_31
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(38903..41362)
DNA (2460bp) protein (820aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MHJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS70490.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Fibronectin type III domain./Regulator of chromosome condensation (RCC1) repeat.
L1_008_000M1_scaffold_162_32
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41530..42579)
DNA (1050bp) protein (350aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KP48_9FIRM
Protein of unknown function (DUF2983).
Uncharacterized protein {ECO:0000313|EMBL:CBL08650.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_162_33
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42581..43768)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AY70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA53824.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Protein of unknown function (DUF3706)./Phosphoribosyl transferase domain.
L1_008_000M1_scaffold_162_34
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(44220..45116)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0IVM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT24634.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
Lipase (class 3).
L1_008_000M1_scaffold_162_35
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(45313..45945)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000361A59D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS77192.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
L1_008_000M1_scaffold_162_36
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(45942..46799)
DNA (858bp) protein (286aa)
Transporter n=1 Tax=Clostridium tetani (strain Massachusetts / E88) RepID=Q893D5_CLOTE
transporter
Transporter {ECO:0000313|EMBL:AAO36407.1}; TaxID=212717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani (strain Massachusetts / E88).;"
L1_008_000M1_scaffold_162_37
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(46799..47176)
DNA (378bp) protein (126aa)
GntR family transcriptional regulator n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J761_9FIRM
GntR family transcriptional regulator {ECO:0000313|EMBL:EOS30039.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
GntR family transcriptional regulator
L1_008_000M1_scaffold_162_38
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47270..47449)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7R1N9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF43621.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_162_39
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47606..48199
DNA (594bp) protein (198aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6ATK5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14287.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_162_40
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

48316..49551
DNA (1236bp) protein (412aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=2 Tax=Roseburia RepID=R6BCB2_9FIRM
L1_008_000M1_scaffold_162_41
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49640..51739)
DNA (2100bp) protein (700aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J261_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT26894.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L1_008_000M1_scaffold_162_42
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(51742..52218)
DNA (477bp) protein (159aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KH05_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EOS42767.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
hypothetical protein
L1_008_000M1_scaffold_162_43
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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comp(52606..53013)
DNA (408bp) protein (136aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IFW7_9FIRM
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:CDB44291.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
transcriptional regulator, BadM/Rrf2 family
L1_008_000M1_scaffold_162_44
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53039..54319)
DNA (1281bp) protein (427aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PV77_9FIRM
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:CDC27440.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_008_000M1_scaffold_162_45
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54569..57154)
DNA (2586bp) protein (862aa)
Heat shock protein ClpB-like protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QSZ5_9FIRM
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
ATP-dependent chaperone ClpB
L1_008_000M1_scaffold_162_46
unknown

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comp(57261..57410)
DNA (150bp) protein (50aa)

This feature has no annotations

L1_008_000M1_scaffold_162_47
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

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comp(57415..58173)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R7AWR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD46957.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
ABC transporter
L1_008_000M1_scaffold_162_48
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

comp(58186..58971)
DNA (786bp) protein (262aa)
ABC transporter permease protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZEX5_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDD46958.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
polar amino acid ABC transporter inner membrane protein
L1_008_000M1_scaffold_162_49
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

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comp(58996..59856)
DNA (861bp) protein (287aa)
ABC transporter substrate-binding protein family 3 n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZUC9_9FIRM
ABC transporter substrate-binding protein family 3 {ECO:0000313|EMBL:CDD46959.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
periplasmic component of amino acid ABC-type transporter/signal transduction system
L1_008_000M1_scaffold_162_50
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(60050..60751)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H8G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE35675.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L1_008_000M1_scaffold_162_51
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61602..62660)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J1F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT26659.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L1_008_000M1_scaffold_162_52
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62863..63933)
DNA (1071bp) protein (357aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T219_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN95804.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_162_53
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(63980..64735)
DNA (756bp) protein (252aa)
RNA polymerase sigma factor n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2AK83_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
FliA/WhiG family RNA polymerase sigma factor
L1_008_000M1_scaffold_162_54
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(64728..65162)
DNA (435bp) protein (145aa)
Anti-sigma F factor {ECO:0000256|HAMAP-Rule:MF_00637}; EC=2.7.11.1 {ECO:0000256|HAMAP-Rule:MF_00637};; Stage II sporulation protein AB {ECO:0000256|HAMAP-Rule:MF_00637}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Clostridium sp. CAG:354 RepID=R7F7D3_9CLOT
L1_008_000M1_scaffold_162_55
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65159..65482)
DNA (324bp) protein (108aa)
Anti-sigma factor antagonist n=1 Tax=Roseburia sp. CAG:182 RepID=R7QY79_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
anti-anti-sigma factor
L1_008_000M1_scaffold_162_56
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(65634..67106)
DNA (1473bp) protein (491aa)
Tetratricopeptide repeat n=2 Tax=Roseburia intestinalis RepID=D4KSG6_9FIRM
Tetratricopeptide repeat.
Tetratricopeptide repeat {ECO:0000313|EMBL:CBL11100.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_162_57
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67106..67249)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NLJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC12085.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_162_58
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67242..68567)
DNA (1326bp) protein (442aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6PQL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC12087.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
L1_008_000M1_scaffold_162_59
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(68675..70066)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IZM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS27251.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L1_008_000M1_scaffold_162_60
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(70195..72843)
DNA (2649bp) protein (883aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J7W3_9FIRM
Displaying items 31-60 of 83 in total

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