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L1_008_000M1_scaffold_172

Search features with annotation key words

Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_172_1
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(1..1437)
-----------------
DNA (1437bp)
protein (479aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AQY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45383.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
conserved hypothetical protein
L1_008_000M1_scaffold_172_2
unknown

Not on your lists

1805..1987
-----------------
DNA (183bp)
protein (61aa)

This feature has no annotations

L1_008_000M1_scaffold_172_3
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(2008..2268)
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D7K0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74799.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
GntR-like transcriptional regulator
L1_008_000M1_scaffold_172_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2255..4231)
-----------------
DNA (1977bp)
protein (659aa)
Type IV secretory pathway, VirD4 components n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9I1_9FIRM
Type IV secretory pathway, VirD4 components
Type IV secretory pathway, VirD4 components {ECO:0000313|EMBL:CBL16276.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_172_5

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comp(4210..5178)
-----------------
DNA (969bp)
protein (323aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U5H3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC75279.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_172_6
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5236..7446)
-----------------
DNA (2211bp)
protein (737aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KNY2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY66799.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Sel1 repeat.
L1_008_000M1_scaffold_172_7

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comp(7450..7857)
-----------------
DNA (408bp)
protein (136aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TGQ2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC65515.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_172_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8195..8875)
-----------------
DNA (681bp)
protein (227aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSZ2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96211.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8862..9134)
-----------------
DNA (273bp)
protein (91aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSZ1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96210.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9148..9543)
-----------------
DNA (396bp)
protein (132aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96208.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9540..10577)
-----------------
DNA (1038bp)
protein (346aa)
NlpC/P60 family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY7_9FIRM
NlpC/P60 family.
NlpC/P60 family {ECO:0000313|EMBL:CBK96206.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10668..12500)
-----------------
DNA (1833bp)
protein (611aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY6_9FIRM
Domain of unknown function DUF87.
Uncharacterized protein {ECO:0000313|EMBL:CBK96205.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12521..13201)
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY5_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBK96204.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13185..13784)
-----------------
DNA (600bp)
protein (200aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96203.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13790..14050)
-----------------
DNA (261bp)
protein (87aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96202.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14047..14772)
-----------------
DNA (726bp)
protein (242aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96201.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_17
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(14784..15770)
-----------------
DNA (987bp)
protein (329aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EM60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX92484.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L1_008_000M1_scaffold_172_18
unknown

Not on your lists

comp(15793..16194)
-----------------
DNA (402bp)
protein (134aa)

This feature has no annotations

L1_008_000M1_scaffold_172_19

Not on your lists

comp(16191..16697)
-----------------
DNA (507bp)
protein (169aa)
Protein belonging to Uncharacterized protein family UPF0398 n=2 Tax=human gut metagenome RepID=K1SHM3_9ZZZZ
hypothetical protein
Protein belonging to Uncharacterized protein family UPF0398 {ECO:0000313|EMBL:EKC54929.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_172_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16848..17222)
-----------------
DNA (375bp)
protein (125aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLJ1_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA83038.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator
L1_008_000M1_scaffold_172_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17344..17685)
-----------------
DNA (342bp)
protein (114aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96200.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17682..18023)
-----------------
DNA (342bp)
protein (114aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSY0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96199.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_172_23
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18020..21331)
-----------------
DNA (3312bp)
protein (1104aa)
Cna protein B-type domain n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EK73_9FIRM
Cna protein B-type domain {ECO:0000313|EMBL:CDE03279.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
Cna protein B-type domain.
L1_008_000M1_scaffold_172_24
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21376..22401)
-----------------
DNA (1026bp)
protein (342aa)
Cna protein B-type domain n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EK73_9FIRM
Cna protein B-type domain {ECO:0000313|EMBL:CDE03279.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L1_008_000M1_scaffold_172_25
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22486..23328)
-----------------
DNA (843bp)
protein (281aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ELI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE03281.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L1_008_000M1_scaffold_172_26
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23403..23765)
-----------------
DNA (363bp)
protein (121aa)
SpoVG family protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ELZ2_9FIRM
SpoVG family protein {ECO:0000313|EMBL:CDE03283.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L1_008_000M1_scaffold_172_27
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23783..24523)
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KIW5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY66775.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L1_008_000M1_scaffold_172_28

Not on your lists

comp(24510..24815)
-----------------
DNA (306bp)
protein (102aa)
Protein containing SpoVT/AbrB-like, predicted transcription regulator domain protein n=1 Tax=human gut metagenome RepID=K1SS86_9ZZZZ
Protein containing SpoVT/AbrB-like, predicted transcription regulator domain protein {ECO:0000313|EMBL:EKC60453.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_172_29
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24817..25077)
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EK80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE03289.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L1_008_000M1_scaffold_172_30
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25059..26042)
-----------------
DNA (984bp)
protein (328aa)
Site-specific DNA methylase (EC:2.1.1.72)
Site-specific DNA methylase n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ELI9_9FIRM
Site-specific DNA methylase {ECO:0000313|EMBL:CDE03291.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
Displaying items 1-30 of 130 in total

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